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Table 2 Haplotype designation, haplogroup determination and their frequencies for the three Y-chromosomal microsatellite loci ( UMN0304, UMN1113 and INRA189 , N Males = 73)

From: Genetic structure of fragmented southern populations of African Cape buffalo (Syncerus caffer caffer)

UMN0304alleles combination

UMN0304haplotype designation

UMN113allele combination

UMN113haplotype designation

INRA189allele combination

INRA189haplotype designation

Haplo-group

Freq

215-225

1

131

1

148-153-158-166

2

{1,1,2}

0,014

217-227

2

133

2

148-153-158-164

3

{2,2,3}

0,110

205-215-225

3

131-157

4

148-162

5

{3,4,5}

0,014

205-215-225

3

131-155

5

148-158

5

{3,5,5}

0,069

205-215-225

3

131-155

5

148-158

8

{3,5,8}

0,027

205-217

4

131-159

3

160

6

{4,3,6}

0,123

205-217

4

131-157

4

160

6

{4,4,6}

0,082

205-215-223

5

131-155

5

148-160

7

{5,5,7}

0,123

205-215-223

5

131-155

5

148-158

8

{5,5,8}

0,014

205-215-223

5

131-155

5

151-156

9

{5,5,9}

0,055

205-215-223

5

131-147-155

6

148-158

5

{5,6,5}

0,027

205-217-223

6

131-157

4

160

6

{6,4,6}

0,014

205-217-223

6

131-157

4

148-160

7

{6,4,7}

0,027

205-217-223

6

131-155

5

148-160

7

{6,5,7}

0,014

215-223

7

131-155

5

148-160

7

{7,5,7}

0,041

205-215

8

131-155

5

148-158

8

{8,5,8}

0,014

205-217-227

9

131-155

5

148-158

8

{9,5,8}

0,014

217-223

10

131-133-147-155

7

137-148-158-162

12

{10,7,12}

0,014

205-215-227

11

133-155

9

148-158

8

{11,9,8}

0,055

205-221-227

12

131-155

5

148-158

8

{12,5,8}

0,027

205-213-227

13

131-155

5

151-156

9

{13,5,9}

0,014

205-213-227

13

131-155

5

151-160

1

{13,5,1}

0,014

205-213-227

13

131-155

5

148-158

8

{13,5,8}

0,014

217-225-227

14

131

1

148-153-158-164

3

{14,1,3}

0,027

213-225

15

133-147-155

8

151-153-162

11

{15,8,11}

0,014

205-215-223

5

131-155

5

148-151

10

{5,5,10}

0,041

  1. Each haplotype was attributed a number to designate the combination of alleles for each of the three loci because they can appear as multicopies on the Y-chromosome. The haplogroup is thus defined as the combination of the haplotypes, written as {n UMN1113 haplotype, n UMN0304 haplotype, n INRA189 haplotype}, where n UMN1113 haplotype = 1,…,15, n UMN0304 haplotype = 1,…,9, and n INRA189 haplotype = 1,…,12.