Skip to main content

Table 2 Haplotype designation, haplogroup determination and their frequencies for the three Y-chromosomal microsatellite loci ( UMN0304, UMN1113 and INRA189 , N Males = 73)

From: Genetic structure of fragmented southern populations of African Cape buffalo (Syncerus caffer caffer)

UMN0304alleles combination UMN0304haplotype designation UMN113allele combination UMN113haplotype designation INRA189allele combination INRA189haplotype designation Haplo-group Freq
215-225 1 131 1 148-153-158-166 2 {1,1,2} 0,014
217-227 2 133 2 148-153-158-164 3 {2,2,3} 0,110
205-215-225 3 131-157 4 148-162 5 {3,4,5} 0,014
205-215-225 3 131-155 5 148-158 5 {3,5,5} 0,069
205-215-225 3 131-155 5 148-158 8 {3,5,8} 0,027
205-217 4 131-159 3 160 6 {4,3,6} 0,123
205-217 4 131-157 4 160 6 {4,4,6} 0,082
205-215-223 5 131-155 5 148-160 7 {5,5,7} 0,123
205-215-223 5 131-155 5 148-158 8 {5,5,8} 0,014
205-215-223 5 131-155 5 151-156 9 {5,5,9} 0,055
205-215-223 5 131-147-155 6 148-158 5 {5,6,5} 0,027
205-217-223 6 131-157 4 160 6 {6,4,6} 0,014
205-217-223 6 131-157 4 148-160 7 {6,4,7} 0,027
205-217-223 6 131-155 5 148-160 7 {6,5,7} 0,014
215-223 7 131-155 5 148-160 7 {7,5,7} 0,041
205-215 8 131-155 5 148-158 8 {8,5,8} 0,014
205-217-227 9 131-155 5 148-158 8 {9,5,8} 0,014
217-223 10 131-133-147-155 7 137-148-158-162 12 {10,7,12} 0,014
205-215-227 11 133-155 9 148-158 8 {11,9,8} 0,055
205-221-227 12 131-155 5 148-158 8 {12,5,8} 0,027
205-213-227 13 131-155 5 151-156 9 {13,5,9} 0,014
205-213-227 13 131-155 5 151-160 1 {13,5,1} 0,014
205-213-227 13 131-155 5 148-158 8 {13,5,8} 0,014
217-225-227 14 131 1 148-153-158-164 3 {14,1,3} 0,027
213-225 15 133-147-155 8 151-153-162 11 {15,8,11} 0,014
205-215-223 5 131-155 5 148-151 10 {5,5,10} 0,041
  1. Each haplotype was attributed a number to designate the combination of alleles for each of the three loci because they can appear as multicopies on the Y-chromosome. The haplogroup is thus defined as the combination of the haplotypes, written as {n UMN1113 haplotype, n UMN0304 haplotype, n INRA189 haplotype}, where n UMN1113 haplotype = 1,…,15, n UMN0304 haplotype = 1,…,9, and n INRA189 haplotype = 1,…,12.