Skip to main content

Table 2 Maximum likelihood bootstrap support of main rodent relationships under different coding models

From: Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades

  Unpartitioned models Partitioned DNA models
Coding
model
/Node
All three
codon
positions
First two
codon positions
and third codon
with RY coding
First two
codon positions
only
Protein
sequences
A partition
per gene
(6 partitions)
A partition per
codon position
(3 partitions)
A partition per
codon position
per gene
(18 partitions)
Squirrel-related clade at the base of the rodent tree 51 35 40 41 46 63 75
Mouse-related clade at the base of the rodent tree 15 28 less than 1 less than 1 17 9 15
Ctenohystrica at the base of the rodent tree 25 30 48 47 31 22 8
Monophyly of squirrel-related clade 86 90 89 98 92 92 95
Monophyly of mouse related clade 96 99 94 77 100 97 99
Monophyly of Ctenohystrica 100 100 99 100 100 100 100
[Anomaluromorpha + Myodonta] monophyly 55 54 65 37 50 72 48
Hystricidae at the base of the Hystricognathi 92 91 89 89 95 91 91