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Figure 9 | BMC Evolutionary Biology

Figure 9

From: Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles

Figure 9

Maximum-likelihood phylogeny based on the 70-taxon seven-locus nuclear DNA data set. This data set was composed of up to 5961 bp. Among the ingroup, 350 characters were parsimony-informative. Nuclear loci included HNF-1α, RAG, RELN, R35, TB29, TB73, and TGFB2. Estimated model parameters conform to the GTR+G+I model of sequence evolution. -ln L = 17485.22059, rate matrix: A-C = 1, A-G = 2.7416, A-T = 0.6815, C-G = 0.6815, C-T = 2.7416, G-T = 1. Base frequencies: A = 0.30, C = 0.20, G = 0.20, and T = 0.30. Proportion of invariant sites (I) = 0.3263, and γ-shape parameter = 0.9023. Node symbols as in Fig. 1.

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