TY - CHAP AU - van Holde, K. E. PY - 1988 DA - 1988// BT - Chromatin PB - Springer-Verlag CY - New York, NY ID - van Holde1988 ER - TY - JOUR AU - Eirín-López, J. M. AU - Li, A. AU - Ausió, J. PY - 2005 DA - 2005// TI - H2AX: tailoring histone H2A for chromatin-dependent genomic integrity JO - Biochem Cell Biol VL - 83 UR - https://doi.org/10.1139/o05-114 DO - 10.1139/o05-114 ID - Eirín-López2005 ER - TY - JOUR AU - Dryhurst, D. D. AU - Thambirajah, A. A. AU - Ausió, J. PY - 2004 DA - 2004// TI - New twists on H2A.Z: a histone variant with a controversial structural and functional past JO - Biochem Cell Biol VL - 82 UR - https://doi.org/10.1139/o04-043 DO - 10.1139/o04-043 ID - Dryhurst2004 ER - TY - JOUR AU - Abbott, D. W. AU - Chadwick, B. P. AU - Thambirajah, A. A. AU - Ausió, J. PY - 2005 DA - 2005// TI - Beyond the Xi: macroH2A chromatin distribution and post-translational modification in an avian system JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M500170200 DO - 10.1074/jbc.M500170200 ID - Abbott2005 ER - TY - JOUR AU - González-Romero, R. AU - Méndez, J. AU - Ausió, J. AU - Eirín-López, J. M. PY - 2008 DA - 2008// TI - Quickly evolving histones, nucleosome stability and chromatin folding: All about histone H2A.Bbd JO - Gene VL - 413 UR - https://doi.org/10.1016/j.gene.2008.02.003 DO - 10.1016/j.gene.2008.02.003 ID - González-Romero2008 ER - TY - JOUR AU - Martianov, I. AU - Brancorini, S. AU - Catena, R. AU - Gansmuller, A. AU - Kotaja, N. AU - Parvinen, M. AU - Sassone-Corsi, P. AU - Davidson, I. PY - 2005 DA - 2005// TI - Polar nuclear localization of H1T2, a histone H1 variant, required for spermatid elongation and DNA condensation during spermiogenesis JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0406060102 DO - 10.1073/pnas.0406060102 ID - Martianov2005 ER - TY - JOUR AU - Konishi, A. AU - Shimizu, S. AU - Hirota, J. AU - Takao, T. AU - Fan, y. AU - Matsuoka, Y. AU - Zhang, L. AU - Yoneda, Y. AU - Fuji, Y. AU - Skoultchi, A. I. PY - 2003 DA - 2003// TI - Involvement of histone H1.2 in apoptosis induced by DNA double-strand breaks JO - Cell VL - 114 UR - https://doi.org/10.1016/S0092-8674(03)00719-0 DO - 10.1016/S0092-8674(03)00719-0 ID - Konishi2003 ER - TY - JOUR AU - Tanaka, M. AU - Hennebold, J. D. AU - MacFarlane, J. AU - Adashi, E. Y. PY - 2001 DA - 2001// TI - A mammalian oocyte-specific linker histone gene H1oo: homology with the genes for oocyte-specific cleavage stage histones (cs-H1) of sea urchin and the B4/H1M histone of the frog JO - Development VL - 128 ID - Tanaka2001 ER - TY - JOUR AU - Parseghian, M. H. AU - Hamkalo, B. A. PY - 2001 DA - 2001// TI - A compendium of the H1 family of somatic subtypes: an elusive cast of characters and their characteristics JO - Biochem Cell Biol VL - 79 UR - https://doi.org/10.1139/o01-099 DO - 10.1139/o01-099 ID - Parseghian2001 ER - TY - JOUR AU - Eirín-López, J. M. AU - Ausió, J. PY - 2007 DA - 2007// TI - H2A.Z-mediated genome-wide chromatin specialization JO - Curr Genomics VL - 8 UR - https://doi.org/10.2174/138920207780076965 DO - 10.2174/138920207780076965 ID - Eirín-López2007 ER - TY - JOUR AU - Malik, H. S. AU - Henikoff, S. PY - 2003 DA - 2003// TI - Phylogenomics of the nucleosome JO - Nat Struct Biol VL - 10 UR - https://doi.org/10.1038/nsb996 DO - 10.1038/nsb996 ID - Malik2003 ER - TY - JOUR AU - Raisner, R. M. AU - Madhani, H. D. PY - 2006 DA - 2006// TI - Patterning chromatin: form and function for H2A.Z variant nucleosomes JO - Curr Opin Genet Dev VL - 16 UR - https://doi.org/10.1016/j.gde.2006.02.005 DO - 10.1016/j.gde.2006.02.005 ID - Raisner2006 ER - TY - JOUR AU - Barski, A. AU - Cuddapah, S. AU - Cui, K. AU - Roth, T. Y. AU - Schones, D. E. AU - Wang, Z. AU - Wei, G. AU - Chepelev, I. AU - Zhao, K. PY - 2007 DA - 2007// TI - High-resolution profiling of histone methylations in the human genome JO - Cell VL - 129 UR - https://doi.org/10.1016/j.cell.2007.05.009 DO - 10.1016/j.cell.2007.05.009 ID - Barski2007 ER - TY - JOUR AU - Bruce, K. AU - Myers, F. A. AU - Mantouvalou, E. AU - Lefevre, P. AU - Greaves, I. AU - Bonifer, C. AU - Tremethick, D. J. AU - Thorne, A. W. AU - Crane-Robinson, C. PY - 2005 DA - 2005// TI - The replacement histone H2A.Z in hyperacetylated form is a feature of active genes in chicken JO - Nucl Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki874 DO - 10.1093/nar/gki874 ID - Bruce2005 ER - TY - JOUR AU - Greaves, I. K. AU - Rangasamy, D. AU - Ridgway, P. AU - Tremethick, D. J. PY - 2007 DA - 2007// TI - H2A.Z contributes to the unique 3D structure of the centromere JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0607870104 DO - 10.1073/pnas.0607870104 ID - Greaves2007 ER - TY - JOUR AU - Sarcinella, E. AU - Zuzarte, P. C. AU - Lau, P. N. AU - Draker, R. AU - Cheung, P. PY - 2007 DA - 2007// TI - Monoubiquitylation of H2A.Z distinguishes its association with euchromatin or facultative heterochromatin JO - Mol Cell Biol VL - 27 UR - https://doi.org/10.1128/MCB.00241-07 DO - 10.1128/MCB.00241-07 ID - Sarcinella2007 ER - TY - JOUR AU - Guillemette, B. AU - Gaudreau, L. PY - 2006 DA - 2006// TI - Reuniting the contrasting functions of H2A.Z JO - Biochem Cell Biol VL - 84 UR - https://doi.org/10.1139/o06-077 DO - 10.1139/o06-077 ID - Guillemette2006 ER - TY - JOUR AU - Zlatanova, J. AU - Thakar, A. PY - 2008 DA - 2008// TI - H2A.Z: view from the top JO - Structure VL - 16 UR - https://doi.org/10.1016/j.str.2007.12.008 DO - 10.1016/j.str.2007.12.008 ID - Zlatanova2008 ER - TY - JOUR AU - Suto, R. K. AU - Clarkson, M. J. AU - Tremethick, D. J. AU - Luger, K. PY - 2000 DA - 2000// TI - Crystal structure of a nucleosome core particle containing the variant histone H2A.Z JO - Nat Struct Biol VL - 7 UR - https://doi.org/10.1038/81971 DO - 10.1038/81971 ID - Suto2000 ER - TY - JOUR AU - Park, Y. -. J. AU - Dyer, P. N. AU - Tremethick, D. J. AU - Luger, K. PY - 2004 DA - 2004// TI - A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M313152200 DO - 10.1074/jbc.M313152200 ID - Park2004 ER - TY - JOUR AU - Thambirajah, A. A. AU - Dryhurst, D. D. AU - Ishibashi, T. AU - Li, A. AU - Maffey, A. H. AU - Ausió, J. PY - 2005 DA - 2005// TI - H2A.Z stabilizes chromatin in a way that is dependent on core histone acetylation JO - J Biol Chem VL - 281 UR - https://doi.org/10.1074/jbc.M601975200 DO - 10.1074/jbc.M601975200 ID - Thambirajah2005 ER - TY - JOUR AU - Fan, J. Y. AU - Gordon, F. AU - Luger, K. AU - Hansen, J. C. AU - Tremethick, D. J. PY - 2002 DA - 2002// TI - The essential histone variant H2A.Z regulates the equilibrium between different chromatin conformational states JO - Nat Struct Biol VL - 9 UR - https://doi.org/10.1038/nsb0402-316b DO - 10.1038/nsb0402-316b ID - Fan2002 ER - TY - JOUR AU - Creyghton, M. P. AU - Markoulaki, S. AU - Levine, S. S. AU - Hanna, J. AU - Lodato, M. A. AU - Sha, K. AU - Young, R. A. AU - Jaenisch, R. AU - Boyer, L. A. PY - 2008 DA - 2008// TI - H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment JO - Cell VL - 135 UR - https://doi.org/10.1016/j.cell.2008.09.056 DO - 10.1016/j.cell.2008.09.056 ID - Creyghton2008 ER - TY - JOUR AU - Fu, Y. AU - Sinha, M. AU - Peterson, C. L. AU - Weng, Z. PY - 2008 DA - 2008// TI - The insulator binding protein CCF positions 20 nucleosomes around its binding sites across the human genome JO - PLoS Genet VL - 4 UR - https://doi.org/10.1371/journal.pgen.1000138 DO - 10.1371/journal.pgen.1000138 ID - Fu2008 ER - TY - JOUR AU - Coon, J. J. AU - Ueberheide, B. AU - Syka, J. E. AU - Dryhurst, D. D. AU - Ausió, J. AU - Shabanowitz, J. AU - Hunt, D. F. PY - 2005 DA - 2005// TI - Protein identification using sequential ion/ion reactions and tandem mass spectrometry JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0503189102 DO - 10.1073/pnas.0503189102 ID - Coon2005 ER - TY - JOUR AU - Eirín-López, J. M. AU - Ishibashi, T. AU - Ausió, J. PY - 2008 DA - 2008// TI - H2A.Bbd: a quickly evolving hypervariable mammalian histone that destabilizes nucleosomes in an acetylation-independent way JO - FASEB J VL - 22 UR - https://doi.org/10.1096/fj.07-9255com DO - 10.1096/fj.07-9255com ID - Eirín-López2008 ER - TY - JOUR AU - Chadwick, B. P. AU - Willard, H. F. PY - 2001 DA - 2001// TI - Histone H2A variants and the inactive X chromosome: identification of a second macroH2A variant JO - Hum Mol Genet VL - 10 UR - https://doi.org/10.1093/hmg/10.10.1101 DO - 10.1093/hmg/10.10.1101 ID - Chadwick2001 ER - TY - JOUR AU - González-Romero, R. AU - Ausió, J. AU - Méndez, J. AU - Eirín-López, J. M. PY - 2008 DA - 2008// TI - Early evolution of histone genes: prevalence of an 'orphon' H1 lineage in protostomes and birth-and-death process in the H2A family JO - J Mol Evol VL - 66 UR - https://doi.org/10.1007/s00239-008-9109-1 DO - 10.1007/s00239-008-9109-1 ID - González-Romero2008 ER - TY - JOUR AU - Eirín-López, J. M. AU - González-Tizón, A. M. AU - Martínez, A. AU - Méndez, J. PY - 2004 DA - 2004// TI - Birth-and-death evolution with strong purifying selection in the histone H1 multigene family and the origin of orphonH1 genes JO - Mol Biol Evol VL - 21 UR - https://doi.org/10.1093/molbev/msh213 DO - 10.1093/molbev/msh213 ID - Eirín-López2004 ER - TY - JOUR AU - Eirín-López, J. M. AU - Lewis, J. D. AU - Howe, L. AU - Ausió, J. PY - 2006 DA - 2006// TI - Common phylogenetic origin of protamine-like (PL) proteins and histone H1: evidence from bivalve PL genes JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msk021 DO - 10.1093/molbev/msk021 ID - Eirín-López2006 ER - TY - JOUR AU - Eirín-López, J. M. AU - Ruiz, M. F. AU - González-Tizón, A. M. AU - Martínez, A. AU - Ausió, J. AU - Sánchez, L. AU - Méndez, J. PY - 2005 DA - 2005// TI - Common evolutionary origin and birth-and-death process in the replication-independent histone H1 isoforms from vertebrate and invertebrate genomes JO - J Mol Evol VL - 61 UR - https://doi.org/10.1007/s00239-004-0328-9 DO - 10.1007/s00239-004-0328-9 ID - Eirín-López2005 ER - TY - JOUR AU - Nei, M. AU - Rooney, A. P. PY - 2006 DA - 2006// TI - Concerted and birth-and-death evolution in multigene families JO - Annu Rev Genet VL - 39 UR - https://doi.org/10.1146/annurev.genet.39.073003.112240 DO - 10.1146/annurev.genet.39.073003.112240 ID - Nei2006 ER - TY - JOUR AU - Piontkivska, H. AU - Rooney, A. P. AU - Nei, M. PY - 2002 DA - 2002// TI - Purifying selection and birth-and-death evolution in the histone H4 gene family JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004127 DO - 10.1093/oxfordjournals.molbev.a004127 ID - Piontkivska2002 ER - TY - JOUR AU - Rooney, A. P. AU - Piontkivska, H. AU - Nei, M. PY - 2002 DA - 2002// TI - Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003983 DO - 10.1093/oxfordjournals.molbev.a003983 ID - Rooney2002 ER - TY - JOUR AU - Luger, K. AU - Mäder, A. W. AU - Richmond, R. K. AU - Sargent, D. F. AU - Richmond, T. J. PY - 1997 DA - 1997// TI - Crystal structure of the nucleosome core particle at 2.8 A resolution JO - Nature VL - 389 UR - https://doi.org/10.1038/38444 DO - 10.1038/38444 ID - Luger1997 ER - TY - JOUR AU - Dorigo, B. AU - Schalch, T. AU - Bystricky, K. AU - Richmond, T. J. PY - 2003 DA - 2003// TI - Chromatin fiber folding: requirements for the histone H4 N-terminal tail JO - J Mol Biol VL - 327 UR - https://doi.org/10.1016/S0022-2836(03)00025-1 DO - 10.1016/S0022-2836(03)00025-1 ID - Dorigo2003 ER - TY - JOUR AU - Bao, Y. AU - Konesky, K. AU - Park, Y. -. J. AU - Rosu, S. AU - Dyer, P. N. AU - Rangasamy, D. AU - Tremethick, D. J. AU - Laybourn, P. J. AU - Luger, K. PY - 2004 DA - 2004// TI - Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA JO - EMBO J VL - 23 UR - https://doi.org/10.1038/sj.emboj.7600316 DO - 10.1038/sj.emboj.7600316 ID - Bao2004 ER - TY - JOUR AU - Arents, G. AU - Burlingame, R. W. AU - Wang, B. C. AU - Love, W. E. AU - Moudrianakis, E. PY - 1991 DA - 1991// TI - The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix JO - Proc Natl Acad Sci USA VL - 88 UR - https://doi.org/10.1073/pnas.88.22.10148 DO - 10.1073/pnas.88.22.10148 ID - Arents1991 ER - TY - JOUR AU - Eirín-López, J. M. AU - Abbott, D. W. AU - Boraston, A. B. PY - 2008 DA - 2008// TI - Insight into Ligand Diversity and Novel Biological Roles for Family 32 Carbohydrate Binding Modules JO - Mol Biol Evol VL - 25 UR - https://doi.org/10.1093/molbev/msn121 DO - 10.1093/molbev/msn121 ID - Eirín-López2008 ER - TY - JOUR AU - Eirín-López, J. M. AU - González-Tizón, A. M. AU - Martínez, A. AU - Méndez, J. PY - 2002 DA - 2002// TI - Molecular and evolutionary analysis of mussel histone genes (Mytilus spp.): possible evidence of an "orphon origin" for H1 histone genes JO - J Mol Evol VL - 55 UR - https://doi.org/10.1007/s00239-002-2325-1 DO - 10.1007/s00239-002-2325-1 ID - Eirín-López2002 ER - TY - JOUR AU - Eirín-López, J. M. AU - Ruiz, M. F. AU - González-Tizón, A. M. AU - Martínez, A. AU - Sánchez, L. AU - Méndez, J. PY - 2004 DA - 2004// TI - Molecular evolutionary characterization of the mussel Mytilus histone multigene family: first record of a tandemly repeated unit of five histone genes containing an H1 subtype with "orphon" features JO - J Mol Evol VL - 58 UR - https://doi.org/10.1007/s00239-003-2531-5 DO - 10.1007/s00239-003-2531-5 ID - Eirín-López2004 ER - TY - JOUR AU - Eirín-López, J. M. AU - Frehlick, L. J. AU - Ausió, J. PY - 2006 DA - 2006// TI - Long-term evolution and functional diversification in the members of the nucleophosmin/nucleoplasmin family of nuclear chaperones JO - Genetics VL - 173 UR - https://doi.org/10.1534/genetics.106.058990 DO - 10.1534/genetics.106.058990 ID - Eirín-López2006 ER - TY - JOUR AU - Jukes, T. H. AU - Bhushan, V. PY - 1986 DA - 1986// TI - Silent nucleotide substitutions and G+C content of some mitochondrial and bacterial genes JO - J Mol Evol VL - 24 UR - https://doi.org/10.1007/BF02099949 DO - 10.1007/BF02099949 ID - Jukes1986 ER - TY - CHAP AU - Kimura, M. PY - 1983 DA - 1983// BT - The Neutral Theory of Molecular Evolution PB - Cambridge University Press CY - Cambridge UR - https://doi.org/10.1017/CBO9780511623486 DO - 10.1017/CBO9780511623486 ID - Kimura1983 ER - TY - JOUR AU - Sueoka, N. PY - 1961 DA - 1961// TI - Correlation between base composition of deoxyribonucleotic acid and composition of proteins JO - Proc Natl Acad Sci USA VL - 47 UR - https://doi.org/10.1073/pnas.47.8.1141 DO - 10.1073/pnas.47.8.1141 ID - Sueoka1961 ER - TY - JOUR AU - Sueoka, N. PY - 1988 DA - 1988// TI - Directional mutation pressure and neutral molecular evolution JO - Proc Natl Acad Sci USA VL - 85 UR - https://doi.org/10.1073/pnas.85.8.2653 DO - 10.1073/pnas.85.8.2653 ID - Sueoka1988 ER - TY - JOUR AU - Rooney, A. P. AU - Zhang, J. AU - Nei, M. PY - 2000 DA - 2000// TI - An unusual form of purifying selection in a sperm protein JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026307 DO - 10.1093/oxfordjournals.molbev.a026307 ID - Rooney2000 ER - TY - JOUR AU - Akashi, H. AU - Gojobori, T. PY - 2002 DA - 2002// TI - Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.062526999 DO - 10.1073/pnas.062526999 ID - Akashi2002 ER - TY - JOUR AU - Rooney, A. P. PY - 2003 DA - 2003// TI - Selection for highly biased amino acid frequency in the TolA cell envelope protein of proteobacteria JO - J Mol Evol VL - 57 UR - https://doi.org/10.1007/s00239-003-2530-6 DO - 10.1007/s00239-003-2530-6 ID - Rooney2003 ER - TY - CHAP AU - Clapier, C. R. AU - Chakravarthy, S. AU - Petosa, C. AU - Fernandez-Tornero, C. AU - Luger, K. AU - Muller, C. W. PY - 2008 DA - 2008// TI - Structure of the Drosophila nucleosome core particle highlights evolutionary constraints on the H2A-H2B histone dimer BT - Proteins ID - Clapier2008 ER - TY - JOUR AU - Marino-Ramirez, L. AU - Hsu, B. AU - Baxevanis, A. D. AU - Landsman, D. PY - 2006 DA - 2006// TI - The Histone Database: a comprehensive resource for histones and histone fold-containing proteins JO - Proteins VL - 62 UR - https://doi.org/10.1002/prot.20814 DO - 10.1002/prot.20814 ID - Marino-Ramirez2006 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT JO - Nucl Acids Symp Ser VL - 41 ID - Hall1999 ER - TY - JOUR AU - Thompson, J. D. AU - Gibson, T. J. AU - Plewniak, F. AU - Jeanmougin, F. AU - Higgins, D. G. PY - 1997 DA - 1997// TI - The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.24.4876 DO - 10.1093/nar/25.24.4876 ID - Thompson1997 ER - TY - JOUR AU - Perez-Bercoff, A. AU - Koch, J. AU - Burglin, T. R. PY - 2006 DA - 2006// TI - LogoBar: bar graph visualization of protein logos with gaps JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/bti761 DO - 10.1093/bioinformatics/bti761 ID - Perez-Bercoff2006 ER - TY - JOUR AU - Arnold, K. AU - Bordoli, L. AU - Kopp, J. AU - Schwede, T. PY - 2006 DA - 2006// TI - The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/bti770 DO - 10.1093/bioinformatics/bti770 ID - Arnold2006 ER - TY - CHAP AU - DeLano, W. L. PY - 2007 DA - 2007// BT - MacPyMOL: A PyMOL-based Molecular Graphics Application for MacOS X PB - DeLano Scientific LLC CY - Palo Alto, CA ID - DeLano2007 ER - TY - JOUR AU - Richter, S. AU - Wenzel, A. AU - Stein, M. AU - Gabdoulline, R. R. AU - Wade, R. C. PY - 2008 DA - 2008// TI - webPIPSA: a web server for the comparison of protein interaction properties JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn181 DO - 10.1093/nar/gkn181 ID - Richter2008 ER - TY - JOUR AU - Madura, J. D. AU - Briggs, J. M. AU - Wade, R. C. AU - Davis, M. E. AU - Luty, B. A. AU - Ilin, A. AU - Antosiewicz, J. AU - Gilson, M. K. AU - Bagheri, B. AU - Scott, L. R. PY - 1995 DA - 1995// TI - Electrostatics and difusion of molecules in solution: simulations with the University of Houston Brownian Dynamics Program JO - Comp Phys Commun VL - 91 UR - https://doi.org/10.1016/0010-4655(95)00043-F DO - 10.1016/0010-4655(95)00043-F ID - Madura1995 ER - TY - JOUR AU - Humphrey, W. AU - Dalke, A. AU - Schulten, K. PY - 1996 DA - 1996// TI - VMD – Visual Molecular Dynamics JO - J Molec Graph VL - 14 UR - https://doi.org/10.1016/0263-7855(96)00018-5 DO - 10.1016/0263-7855(96)00018-5 ID - Humphrey1996 ER - TY - CHAP AU - Nei, M. AU - Kumar, S. PY - 2000 DA - 2000// BT - Molecular Evolution and Phylogenetics PB - Oxford University Press CY - New York ID - Nei2000 ER - TY - JOUR AU - Zhang, J. AU - Rosenberg, H. F. AU - Nei, M. PY - 1998 DA - 1998// TI - Positive Darwinian selection after gene duplication in primate ribonuclease genes JO - Proc Natl Acad Sci USA VL - 95 UR - https://doi.org/10.1073/pnas.95.7.3708 DO - 10.1073/pnas.95.7.3708 ID - Zhang1998 ER - TY - JOUR AU - Tamura, K. AU - Dudley, J. AU - Nei, M. AU - Kumar, S. PY - 2007 DA - 2007// TI - MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm092 DO - 10.1093/molbev/msm092 ID - Tamura2007 ER - TY - JOUR AU - Wright, F. PY - 1990 DA - 1990// TI - The 'effective number of codons' used in a gene JO - Gene VL - 87 UR - https://doi.org/10.1016/0378-1119(90)90491-9 DO - 10.1016/0378-1119(90)90491-9 ID - Wright1990 ER - TY - JOUR AU - Rozas, J. AU - Sánchez-del Barrio, J. C. AU - Messeguer, X. AU - Rozas, P. PY - 2003 DA - 2003// TI - DnaSP, DNA polymorphism analyses by the coalescent and other methods JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg359 DO - 10.1093/bioinformatics/btg359 ID - Rozas2003 ER - TY - CHAP AU - Li, W. H. PY - 1997 DA - 1997// BT - Molecular Evolution PB - Sinauer CY - Sunderland, MA ID - Li1997 ER - TY - JOUR AU - Saitou, N. AU - Nei, M. PY - 1987 DA - 1987// TI - The neighbor-joining method: a new method for reconstructing phylogenetic trees JO - Mol Biol Evol VL - 4 ID - Saitou1987 ER - TY - JOUR AU - Rzhetsky, A. AU - Nei, M. PY - 1992 DA - 1992// TI - A simple method for estimating and testing minimum-evolution trees JO - Mol Biol Evol VL - 9 ID - Rzhetsky1992 ER - TY - JOUR AU - Felsenstein, J. PY - 1985 DA - 1985// TI - Confidence limits on phylogenies: an approach using the bootstrap JO - Evolution Int J Org Evolution VL - 39 UR - https://doi.org/10.2307/2408678 DO - 10.2307/2408678 ID - Felsenstein1985 ER - TY - JOUR AU - Sitnikova, T. PY - 1996 DA - 1996// TI - Bootstrap method of interior-branch test for phylogenetic trees JO - Mol Biol Evol VL - 13 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025620 DO - 10.1093/oxfordjournals.molbev.a025620 ID - Sitnikova1996 ER - TY - JOUR AU - Sitnikova, T. AU - Rzhetsky, A. AU - Nei, M. PY - 1995 DA - 1995// TI - Interior-branch and bootstrap tests of phylogenetic trees JO - Mol Biol Evol VL - 12 ID - Sitnikova1995 ER - TY - JOUR AU - Roger, A. J. AU - Svard, S. G. AU - Tovar, J. AU - Clark, C. G. AU - Smith, M. W. AU - Gillin, F. D. AU - Sogin, M. L. PY - 1998 DA - 1998// TI - A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria JO - Proc Natl Acad Sci USA VL - 95 UR - https://doi.org/10.1073/pnas.95.1.229 DO - 10.1073/pnas.95.1.229 ID - Roger1998 ER -