Genomic taxonomy of vibrios

Thompson, Cristiane C; Vicente, Ana Carolina P; Souza, Rangel C; Vasconcelos, Ana Tereza R; Vesth, Tammi; Alves, Nelson; Ussery, David W; Iida, Tetsuya; Thompson, Fabiano L

doi:10.1186/1471-2148-9-258

BMC Ecology and Evolution

Table 1 Genomic features of the vibrios genomes.

From: Genomic taxonomy of vibrios

Organism	Accession no.	Genome size (nt)	G+C (mol%)	No. of CDS	% coding region	Nc*
Aliivibrio salmonicida FLI1238	FM178379	3325164	39		77	48
Chromosome I	FM178380	1206461	38	2820	77
Chromosome II				984
Photobacterium profundum SS9
Chromosome I	CR354531	4085304	41	3416	82	51
Chromosome II	CR354532	2237943	41	2006	80
Vibrio alginolyticus 40B	ACZB00000000	5234286	45	4341	81	53
Vibrio alginolyticus 12G01	AAPS00000000	5160431	44	4732	86	53
Vibrio angustum S14⁺	AAOJ00000000	5101447	39	4558	84	48
Vibrio campbellii AND4	ABGR00000000	4255798	44	3935	85	53
Vibrio cholerae N16961	AE003852	2961149	47		87	52
Chromosome I	AE003853	1072315	46	2742	84
Chromosome II				1093
Vibrio cholerae 0395	CP000627	3024069	47		88	52
Chromosome I	CP000626	1108250	46	2742	86
Chromosome II				1133
Vibrio cholerae 1587	AAUR00000000	4137501	47	3758	82	52
Vibrio cholerae 2740-80	AAUT00000000	3945478	47	3771	87	52
Vibrio cholerae 623-39	AAWG00000000	3975259	47	3777	86	52
Vibrio cholerae B33	AAWE00000000	4026835	47	3677	83	53
Vibrio cholerae MAK757	AAUS00000000	3917446	47	3501	82	52
Vibrio cholerae MZO-2	AAWF00000000	3862985	47	3425	83	52
Vibrio cholerae MZO-3	AAUU00000000	4146039	47	3897	86	52
Vibrio cholerae NCTC8457	AAWD00000000	4063388	47	3975	86	53
Vibrio cholerae V52	AAKJ00000000	3974495	47	3815	86	52
Vibrio fischeri ES114⁺	CP000020	2897536	38			45
Chromosome I	CP000021	1330333	37	2586	86
Chromosome II				1175	87
Vibrio fischeri MJ11⁺						45
Chromosome I	CP001139	2905029	38	2590	86
Chromosome II	CP001133	1418848	37	1254	87
Vibrio harveyi-like 1AD3	ACZC00000000	5989646	46	4954	66	51
Vibrio harveyi ATCC BAA-1116	CP000789	3765351	45		85	53
Chromosome I	CP000790	2204018	45	3546	86
Chromosome II				2374
Vibrio harveyi HY01	AAWP00000000	5400985	45	4327	75	51
Vibrio mimicus VM573	ACYV00000000	4373300	46	3744	86	53
Vibrio mimicus VM603	ACYU00000000	4421792	46	3790	86	53
Vibrio parahaemolyticus RIMD2210633
Chromosome I	BA000031	3288558	45	3080	86	52
Chromosome II	BA000032	1877212	45	1752	86
Vibrio parahaemolyticus AQ3810	AAWQ00000000	5771228	45	5509	80	53
Vibrio shilonii AK1	ABCH00000000	5701826	43	5360	88	54
Vibrio sp Ex25	AAKK00000000	4844262	44	4240	84	53
Vibrio sp MED222	AAND00000000	4891901	43	4590	85	52
Vibrio splendidus 12B01	AAMR00000000	5596386	44	5231	85	53
Vibrio vulnificus CMCP6
Chromosome I	AE016795	3281944	46	2915	83	53
Chromosome II	AE016796	1844853	47	1557	86
Vibrio vulnificus YJ016	BA000037	3354505	46		87	53
Chromosome I	BA000038	1857073	47	3259	89
Chromosome II				1696

The genomes sequenced by this study are in bold. ⁺Vibrio angustum and Vibrio fischeri were reclassified as Photobacterium angustum [67] and Aliivibrio fischeri [35], respectively. *calculated using concatenated chromosome sequences.

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