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Table 1 Gene content comparisons between plastid genomes.

From: Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids

Genes

 

Species

 

No.

Heterokonts

Hapto

Crypto

Rhodophytes

  

Esil

Fves

Vlit

Haka

Ptri

Osin

Tpse

Ehux

Gthe

Rsal

Gten

Ppur

Ccal

Cmer

83 genes listed in Table S3*, rpl36, rbcR, ccsA

86

+

+

+

+

+

+

+

+

+

+

+

+

+

+

rpoC1, rpoC2, ycf35, ycf46

4

+

+

+/-

+

+

+

+

+

+

+

+

+

+/-

-

cbbX, ccs1, tatC

3

+

+

+

+

+

+

+

+

+

+

+

-

+/-

+

petL, petM

2

+

+

+

+

+

+

+

+

+

+

-

+

-

+

thiG, thisS

2

+

+

+

+

+

+

+

+

-

-

+

+/-

+

+

dnaB, ftsH, petF, psaE, psbX, rpl1, rpl4, rpl11, rpl12, rpl13, rpl18, rpl24, rpl29, rpl32, rpl35, rps20, sufC, ycf33

18

+

+

+

+

+

+

+

-

+

+

+

+

+/-

+

psbY

1

+

+

+

+

+

-

+

-

-

+

-

-

-

+

ycf41, ycf42, ycf66

3

+

+

+

+/-

+

+/-

+

-

-

-

-

-

-

-

psbW, secG, tsf

3

+

+

+/-

-

+

+

+

+/-

+

+

+/-

+/-

+/-

+/-

ftrB, ilvB, ilvH

3

+

+

+

+

-

-

-

-

+

+

+

+

+/-

+/-

ycf65

1

+

+

+

+

-

-

-

+

-

-

+

-

+

+

acsF, petJ, rps1, ycf34, ycf54

5

+

+

+/-

+

-

-

-

-

-

-

+/-

+/-

+/-

+/-

chlB, chlL, chlN, rpl9

4

+

+

+

-

-

-

-

-

-

-

+/-

+/-

+/-

+/-

ycf19, ycf37

2

+

+

+

-

-

-

-

+/-

+

+

+

+

+

+/-

Escp124 (FvORF76) ~ ycf60

1

+

+

+

-

-

-

-

+

-

-

+

-

+

+

Escp152 (FvORF501)

1

+

+

-

-

-

-

-

-

-

-

-

-

-

-

hlip ~ ycf17

1

+

-

+

-

-

-

-

-

+

+

-

+

+

+

syfB

1

+

-

-

-

+

-

-

-

-

-

+

+

-

-

Escp36, Escp117, Escp161

3

+

-

-

-

-

-

-

-

-

-

-

-

-

-

  1. E. siliculosus (Esil) and F. vesiculosus (Fves) cpDNAs were compared with those of other heterokonts, haptophyte (Hapto), cryptophytes (Crypto) and rhodophytes. Presence (+), absence (-) or presence of only a subset (+/-) of the genes listed in the first column is indicated. Species abbreviations: Vaucheria litorea (Vlit), Heterosigma akashiwo (Haka), Phaeodactylum tricornutum (Ptri), Odontella sinensis (Osin), Thalassiosira pseudonana (Tpeu), Emiliania huxleyi (Ehux), Guillardia theta (Gthe), Rhodomonas salina (Rsal), Gracilaria tenuistitipata (Gten), Porphyra purpurea (Ppur), Cyanidium caldarium (Ccal), Cyanidioschyzon merolae (Cmer).
  2. (*) see additional file 2.