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Table 1 Statistics of polymorphism, which was generated by DnaSP [39].

From: Positive selection for the male functionality of a co-retroposed gene in the hominoids

LocusA Length (bp) #Single nucleotide polymorphisms θ/siteB π/site #indels πindel/siteD
complete 4,200 21 0.00101 0.00064 8 0.0002
5'flanking 736 1 0.00028 0.00041 1 0.0001
3'flanking 875 11 0.00255 0.00148 6 0.0010
PIPSL-CDS 2,589 9 0.00071 0.00042 1C 0.00001
  1. A. "Complete" indicates the full locus of PIPSL, which consists of 736 bp 5' flanking region, 1,482 bp PIP5K1A-derived CDS, 1,107 bp PSMD4-derived CDS and 875 bp 3' flanking region. 5' flanking region includes both 592 bp promoter and 144 bp 5' UTR, while 3' flanking region indicates 3' UTR.
  2. B. θ is the selection coefficient or 4N e μ (N e and μ indicates the effective population size and mutation rate, respectively).
  3. C. This unique indel is heterozygous.
  4. D. Indel diversity is calculated using the most conservative way, i.e., we only count diallelic difference and regard the copy number variants in 3' UTR as only two alleles. Thus, the indel diversity of 3' UTR might be underestimated.