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Table 1 Strains and size of cbf5 intron.

From: Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene

order*

family**

species***

references****

intron (bp)

D

D

Acidilobus aceticus

[2],a

29

D

D

Aeropyrum camini

[2],a

37

D

D

Aeropyrum pernix

[1, 2, 52]

38

D

D

Caldisphaera lagunensis

[2],a

29

D

D

Desulfurococcus amylolyticus

a

21

D

D

Desulfurococcus mobilis

[2],a

16

D

D

Desulfurococcus mucosus

a

16

D

D

Ignicoccus hospitalis

[31]

0

D

D

Ignicoccus islandicus

[2],a

0

D

D

Ignicoccus pacificus

a

0

D

D

Ignisphaera aggregans

a

39

D

D

Staphylothermus hellenicus

a

36

D

D

Staphylothermus marinus

[2],a

36

D

D

Stetteria hydrogenophila

[2],a

33

D

D

Sulfophobococcus zilligii

[2],a

32

D

D

Thermodiscus maritimus

[2],a

44

D

D

Thermosphaera aggregans

[2],a

19

D

P

Hyperthermus butylicus

[2],a

0

D

P

Pyrodictium abyssi

a

0

D

P

Pyrodictium brockii

a

0

D

P

Pyrodictium occultum

[2],a

0

D

P

Pyrolobus fumarii

[2],a

0

D

u

'Caldococcus noboribetus'

a

29

S

S

Acidianus ambivalens

a

20

S

S

Acidianus brierleyi

a

19

S

S

Acidianus infernus

[2],a

20

S

S

Metallosphaera hakonensis

[2],a

19

S

S

Metallosphaera sedula

[2],a

19

S

S

Stygiolobus azoricus

[2],a

22

S

S

Sulfolobus acidocaldarius

[2, 48]

22

S

S

Sulfolobus acidocaldarius

[2],a

22

S

S

Sulfolobus metallicus

[2],a

22

S

S

Sulfolobus shibatae

[2],a

23

S

S

Sulfolobus solfataricus

[1, 53]

22

S

S

Sulfolobus tokodaii

[1, 54]

31

S

S

Sulfurisphaera ohwakuensis

[2],a

31

T

Tf

'Thermofilum librum'

a

0

T

Tf

Thermofilum pendens

a

0

T

Tp

Caldivirga maquilingensis

[2],a

0

T

Tp

Pyrobaculum aerophilum

[55]

0

T

Tp

Pyrobaculum arsenaticum

a

0

T

Tp

Pyrobaculum islandicum

a

0

T

Tp

Pyrobaculum oguniense

[2],a

0

T

Tp

Pyrobaculum organotrophum

a

0

T

Tp

Pyrobaculum calidifontis

unpublished

0

T

Tp

Thermocladium modestius

[2],a

0

T

Tp

Thermoproteus neutrophilus

[2],a

0

T

Tp

Thermoproteus tenax

[2],a

0

T

Tp

Vulcanisaeta distributa

[2],a

0

T

Tp

Vulcanisaeta souniana

a

0

C

C

'Cenarchaeum symbiosum'

[2, 56]

0

N

N

'Nitrosopumilus maritimus'

unpublished

0

K

 

Ca. Korarchaeum cryptofilum

[30]

0

  1. *: D; Desulfurococcales, S; Sulfolobales, T; Thermoproteales, C; 'Cenarchaeales', N; 'Nitrosopumilales', K; 'Korarcheaota' (phylum)
  2. **: D; Desulfurococcaceae, P; Pyrodictiaceae, u; unclassified, S; Sulfolobaceae, Tf; Thermofilaceae, Tp; Thermoproteaceae, C; Cenarchaeaceae, N; 'Nitrosopumilaceae'
  3. ***: Ca., Candidatus
  4. ****: Only the references for the data used in the present study are shown. See the text in the detail. a; the present study.