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Table 1 Information of 82 fungi genomes used in this study

From: A fungal phylogeny based on 82 complete genomes using the composition vector method

Species Strain (Sub)Phylum Source Download date
Aspergillus clavatus NRRL1 Ascomycota BROAD-FGI Mar. 2008
Aspergillus flavus NRRL3357 Ascomycota BROAD-FGI Mar. 2008
Aspergillus fumigatus Af293 Ascomycota BROAD-FGI Mar. 2008
Aspergillus nidulans FGSCA4 Ascomycota BROAD-FGI Mar. 2008
Aspergillus niger a ATCC1015 Ascomycota BROAD-FGI Mar. 2008
Aspergillus oryzae RIB40 Ascomycota BROAD-FGI Mar. 2008
Aspergillus terreus NIH2624 Ascomycota BROAD-FGI Mar. 2008
Botrytis cinerea B05.10 Ascomycota BROAD-FGI Mar. 2008
Candida albicans WO-1 Ascomycota BROAD-FGI Mar. 2008
Candida albicans SC5314 Ascomycota BROAD-FGI Mar. 2008
Candida glabrata CBS138 Ascomycota NCBI Mar. 2008
Candida guilliermondii ATCC6260 Ascomycota BROAD-FGI Mar. 2008
Candida lusitaniae ATCC42720 Ascomycota BROAD-FGI Mar. 2008
Candida parapsilosis isolate 317 Ascomycota BROAD-FGI Mar. 2008
Candida tropicalis MYA-3404 Ascomycota BROAD-FGI Mar. 2008
Chaetomium globosum CBS148.51 Ascomycota BROAD-FGI Mar. 2008
Coccidioides immitis RS Ascomycota BROAD-FGI Aug. 2008
Coccidioides immitis h538.4 Ascomycota BROAD-FGI Aug. 2008
Coccidioides immitis RMSCC2394 Ascomycota BROAD-FGI Aug. 2008
Coccidioides immitis RMSCC3703 Ascomycota BROAD-FGI Aug. 2008
Coccidioides posadasii Silveira Ascomycota BROAD-FGI Aug. 2008
Coccidioides posadasii RMSCC3488 Ascomycota BROAD-FGI Aug. 2008
Cochliobolus heterostrophus C5 Ascomycota JGI Aug. 2008
Paracoccidioides brasiliensis Pb01 Ascomycota BROAD-FGI Aug. 2008
Paracoccidioides brasiliensis Pb03 Ascomycota BROAD-FGI Aug. 2008
Paracoccidioides brasiliensis Pb18 Ascomycota BROAD-FGI Aug. 2008
Debaryomyces hansenii CBS767 Ascomycota BROAD-FGI Mar. 2008
Eremothecium gossypii b ATCC10895 Ascomycota NCBI Mar. 2008
Fusarium graminearum PH-1 Ascomycota BROAD-FGI Mar. 2008
Fusarium oxysporum f. sp. lycopersici Ascomycota BROAD-FGI Mar. 2008
Fusarium verticillioides 7600 Ascomycota BROAD-FGI Mar. 2008
Histoplasma capsulatum c WU24(NAm1) Ascomycota BROAD-FGI Mar. 2008
Kluyveromyces lactis NRRLY-1140 Ascomycota BROAD-FGI Mar. 2008
Kluyveromyces waltii NCYC 2644 Ascomycota RFCG Mar. 2008
Lodderomyces elongisporus NRRLYB-4239 Ascomycota BROAD-FGI Mar. 2008
Magnaporthe grisea 70–15 Ascomycota BROAD-FGI Mar. 2008
Mycosphaerella fijiensis CIRAD86 Ascomycota JGI Mar. 2008
Mycosphaerella graminicola IPO323 Ascomycota JGI Mar. 2008
Nectria haematococca d MPVI Ascomycota JGI Mar. 2008
Neosartorya fischeri NRRL181 Ascomycota BROAD-FGI Mar. 2008
Neurospora crassa OR74A Ascomycota BROAD-FG Mar. 2008I
Pyrenophora tritici-repentis Pt-1C-BFP Ascomycota BROAD-FGI Aug. 2008
Pichia stipitis CBS6054 Ascomycota JGI Mar. 2008
Podospora anserina DSM980 Ascomycota RFCG Mar. 2008
Saccharomyces cerevisiae S288C Ascomycota NCBI Mar. 2008
Saccharomyces cerevisiae rm11-1a Ascomycota BROAD-FGI Mar. 2008
Saccharomyces cerevisiae YJM789 Ascomycota RFCG Mar. 2008
Saccharomyces paradoxus NRRLY-17217 Ascomycota RFCG Mar. 2008
Saccharomyces mikatae IFO1815 Ascomycota RFCG Mar. 2008
Saccharomyces kudriavzevii IFO1802 Ascomycota RFCG Mar. 2008
Saccharomyces bayanus MCYC623 Ascomycota RFCG Mar. 2008
Saccharomyces castellii NRRLY-12630 Ascomycota RFCG Mar. 2008
Saccharomyces kluyveri NRRL Y-12651 Ascomycota RFCG Mar. 2008
Schizosaccharomyces japonicus yFS275 Ascomycota BROAD-FGI Mar. 2008
Schizosaccharomyces octosporus yFS286 Ascomycota FGR Aug. 2008
Schizosaccharomyces pombe 972h- Ascomycota BROAD-FGI Mar. 2008
Sclerotinia sclerotiorum 1980 Ascomycota BROAD-FGI Mar. 2008
Stagonospora nodorum SN15 Ascomycota BROAD-FGI Mar. 2008
Trichoderma atroviride IMI202040 Ascomycota JGI Aug. 2008
Trichoderma reesei QM6a Ascomycota JGI Mar. 2008
Trichoderma virens Gv29-8 Ascomycota JGI Mar. 2008
Uncinocarpus reesii 1704 Ascomycota BROAD-FGI Mar. 2008
Verticillium dahliae VdLs.17 Ascomycota BROAD-FGI Aug. 2008
Verticillium albo-atrum VaMs.102 Ascomycota BROAD-FGI Aug. 2008
Yarrowia lipolytica CLIB122 Ascomycota NCBI Mar. 2008
Coprinus cinereus Okayama7#130 Basidiomycota BROAD-FGI Mar. 2008
Cryptococcus neoformans serotypeA, strainH99 Basidiomycota BROAD-FGI Mar. 2008
Cryptococcus neoformans serotypeD, strainJEC21 Basidiomycota NCBI Mar. 2008
Cryptococcus gattii serotypeB, strainWM276 Basidiomycota RFCG Mar. 2008
Cryptococcus gattii serotypeB/C, strainR265 Basidiomycota RFCG Mar. 2008
Laccaria bicolor S238N-H82 Basidiomycota JGI Mar. 2008
Malassezia globosa CBS7966 Basidiomycota FGR Aug. 2008
Phanerochaete chrysosporium RP-78 Basidiomycota JGI Mar. 2008
Postia placenta   Basidiomycota JGI Mar. 2008
Puccinia graminis f. sp. tritici Basidiomycota BROAD-FGI Mar. 2008
Sporobolomyces roseus   Basidiomycota JGI Mar. 2008
Ustilago maydis 521 Basidiomycota BROAD-FGI Mar. 2008
Batrachochytrium dendrobatidis JAM81 Chytridiomycota JGI Apr. 2008
Batrachochytrium dendrobatidis JEL423 Chytridiomycota BROAD-FGI Mar. 2008
Rhizopus oryzae RA99–880 Mucoromycotina BROAD-FGI Mar. 2008
Phycomyces blakesleeanus   Mucoromycotina JGI Mar. 2008
Encephalitozoon cuniculi GB-M1 Microsporidia NCBI Mar. 2008
  1. aannotated in house ([See Additional file 3])
  2. dsynonym: Ashbya gossypii
  3. cteleomorph: Ajellomyces capsulata
  4. danamorph: Fusarium solani