From: Intronization, de-intronization and intron sliding are rare in Cryptococcus
 |  | Non- | Alternative | JEC21/alt boundary |  |  | |||
---|---|---|---|---|---|---|---|---|---|
 | Int | conserved | In Frame | Presence/Absence | Frame |  | |||
Gene | # | Boundary | Boundaries | JEC21 | H99 | R265 | WM276 | shift | Comments |
Conserved alternative boundary | |||||||||
CNA00590 | 1 | 5' | -6 (GTGAGT) | +/+ | +/+ | -/+ | -/+ | Yes | cDNA supporting alternative boundary |
CNA03150 | 3 | 3' | -9 (CAG) | +/+ | -/+ | -/+ | -/+ | Yes | Â |
CNC00370 | 9 | 5' | +3 (GTGAGT) | +/+ | -/+ | -/+ | -/+ | Yes | cDNA supporting intron ret. |
CNC01260 | 8 | 3' | +6 (TAG) | +/+ | +/+ | -/+ | -/+ | Yes | cDNA supporting alt boundary, intron ret. |
CND02500 | 1 | 3' | +6 (TAG) | +/+ | +/+ | -/+ | -/+ | Yes | cDNA supporting out-of-frame boundary |
CND03170 | 8 | 5' | +6 (GTAAGT) | +/+ | +/+ | -/+ | +/+ | Yes | Â |
CND03550 | 1 | 3' | +6 (CAG) | +/+ | -/+ | +/+ | +/+ | Yes | Fig 2A |
CND03880 | 7 | 3' | -3 (CAG) | +/+ | +/+ | -/+ | -/+ | Yes | Â |
CND04350 | 1 | 3' | +9 (C/TAG) | +/+ | -/+ | -/+ | -/+ | Yes | Â |
CNE00380 | 3 | 3' | +3 (C/AAG) | +/+ | -/+ | -/+ | -/+ | No | cDNA supporting alternative boundary |
CNE01370 | 3 | 3' | +9 (CAG) | +/+ | +/+ | +/+ | -/+ | Yes | Â |
CNF02810 | 9 | 3' | +9 (C/TAG) | +/+ | +/+ | -/+ | -/+ | Yes | Â |
CNH03260 | 8 | 3' | +6 (TAG) | +/+ | -/+ | -/+ | -/+ | Yes | Â |
CNK01580 | 2 | 3' | +6 (C/TAG) | +/+ | +/+ | -/+ | -/+ | No | cDNAs supporting alternative boundary |
Non-conserved alternative boundaries | |||||||||
CNA01650 | 1 | 3' | -3 (TAG) | +/- | -/+ | -/+ | -/+ | Yes | Â |
CNB04950 | 6 | 5' | +3 (GTTCAC) | +/- | +/- | -/+ | -/+ | No | Â |
CNC04760 | 1 | 3' | +3 (TAG) | +/- | +/- | +/+ | -/+ | Yes | Fig 2B |
CND00770 | 1 | 3' | -3 (CAG) | +/- | +/- | +/- | -/+ | Yes | Â |
CNH03490 | 7 | 3' | -12 (CAG) | +/- | +/- | -/+ | -/+ | Yes | Â |
CNI02860 | 6 | 5' | +3 (GTTCAT) | +/- | +/- | +/- | -/+ | Yes | Â |
CNK00690 | 2 | 3' | +6 (CAG) | +/+ | -/+ | +/- | +/+ | Yes | Â |
CNL04670 | 4 | 3' | +9 (C/TAG) | +/- | +/+ | -/+ | -/+ | Yes | Â |
CNL06040 | 1 | 3' | -3 (GAG) | +/- | +/- | +/+ | -/+ | Yes | Â |
CNM02250 | 2 | 3' | -9 (AAG) | +/- | +/- | -/+ | -/+ | No | Â |
Intronization/de-intronization | |||||||||
CND01950 | 3 | 3' | No | +/ | -/ | -/ | -/ | No | Intronization Fig 3B (1/0 cDNAs spliced/unspliced) |
CNF02770 | 6 | Both | No | +/ | -/ | -/ | -/ | No | Intronization Fig 3E (1/7 cDNAs spliced/unspliced) |
CNG00990 | 3 | Both | No | +/ | -/ | -/ | -/ | No | Intronization Fig 3A (1/4 cDNAs spliced/unspliced) |
CNL03830 | 4 | 3' | No | +/ | -/ | -/ | -/ | No | Intronization Fig 3D (1/7 cDNAs spliced/unspliced) |
CNI02050 | 4 | Both | No | +/ | -/ | -/ | -/ | No | Intronization Fig 3C (2/4 cDNAs spliced/unspliced) |
CNL04380 | 1 | 3' | No | +/ | +/ | -/ | -/ | Yes | Direction unclear Fig 4A (1/0 cDNAs spliced/unspliced) |
CND00470 | 1 | 5' | No | +/ | -/ | -/ | +/ | No | Convergent Fig 4B (2/0 cDNAs spliced/unspliced) |
More complex cases | |||||||||
CNB05120 | 2 | 5' | No | +/ | +/ | -/ | +/ | Yes | Unclear (53 bp) |
CNF04220 | 1 | Both | No | +/ | +/ | -/ | -/ | Yes | Unclear (58 bp) |
CNI04240 | 1 | 3' | No | +/ | -/ | +/ | +/ | Yes | Unclear (64 bp) |
CNJ02980 | 2 | 5' | No | +/ | +/ | -/ | -/ | Yes | Unclear (52/53 bp) |
CNK02560 | 2 | 3' | No | +/ | -/ | -/ | -/ | Yes | Unclear (136/137/143 bp) |
CNK02690 | 2 | 3' | No | +/ | +/ | -/ | -/ | Yes | Unclear (57/58 bp) |
CNL06330 | 4 | 3' | No | +/ | -/ | +/ | +/ | Yes | Unclear (62 bp) |
CNM00170 | 5 | Both | No | +/ | -/ | -/ | -/ | Yes | Unclear (Fig 4C), unspliced cDNA (61/64 bp) |
CNN00940 | 2 | 3' | No | +/ | -/ | +/ | +/ | Yes | Unclear (84 bp, inframe stop) |