TY - JOUR AU - Seehausen, O. PY - 2006 DA - 2006// TI - African cichlid fish: a model system in adaptive radiation research JO - Proc R Soc Lond B VL - 273 UR - https://doi.org/10.1098/rspb.2006.3539 DO - 10.1098/rspb.2006.3539 ID - Seehausen2006 ER - TY - JOUR AU - Kocher, T. D. PY - 2004 DA - 2004// TI - Adaptive evolution and explosive speciation: The cichlid fish model JO - Nat Rev Genet VL - 5 UR - https://doi.org/10.1038/nrg1316 DO - 10.1038/nrg1316 ID - Kocher2004 ER - TY - JOUR AU - Salzburger, W. PY - 2009 DA - 2009// TI - The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes JO - Mol Ecol VL - 18 UR - https://doi.org/10.1111/j.1365-294X.2008.03981.x DO - 10.1111/j.1365-294X.2008.03981.x ID - Salzburger2009 ER - TY - JOUR AU - Terai, Y. AU - Morikawa, N. AU - Kawakami, K. AU - Okada, N. PY - 2003 DA - 2003// TI - The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids JO - Proc Natl Acad Sci USA VL - 100 UR - https://doi.org/10.1073/pnas.2132833100 DO - 10.1073/pnas.2132833100 ID - Terai2003 ER - TY - JOUR AU - Streelman, J. AU - Peichel, C. AU - Parichy, D. PY - 2007 DA - 2007// TI - Developmental genetics of adaptation in fishes: The case of novelty JO - Ann Rev Ecol Evol Syst VL - 38 UR - https://doi.org/10.1146/annurev.ecolsys.38.091206.095537 DO - 10.1146/annurev.ecolsys.38.091206.095537 ID - Streelman2007 ER - TY - JOUR AU - Sugie, A. AU - Terai, Y. AU - R, O. AU - Okada, N. PY - 2004 DA - 2004// TI - The evolution of genes for pigmentation in African cichlid fishes JO - Gene VL - 343 UR - https://doi.org/10.1016/j.gene.2004.09.019 DO - 10.1016/j.gene.2004.09.019 ID - Sugie2004 ER - TY - BOOK AU - Coyne, J. A. AU - Orr, H. A. PY - 2004 DA - 2004// TI - Speciation PB - Sinauer Associates Inc CY - Sunderland MA U.S.A. ID - Coyne2004 ER - TY - JOUR AU - Mayer, W. E. AU - Tichy, H. AU - Klein, J. PY - 1998 DA - 1998// TI - Phylogeny of African cichlid fishes as revealed by molecular markers JO - Heredity VL - 80 UR - https://doi.org/10.1046/j.1365-2540.1998.00347.x DO - 10.1046/j.1365-2540.1998.00347.x ID - Mayer1998 ER - TY - JOUR AU - Kocher, T. D. AU - Conroy, J. A. AU - Mckaye, K. R. AU - Stauffer, J. R. AU - Lockwood, S. F. PY - 1995 DA - 1995// TI - Evolution of NADH dehydrogenase subunit 2 in east African cichlid fish JO - Mol Phylogenet Evol VL - 4 UR - https://doi.org/10.1006/mpev.1995.1039 DO - 10.1006/mpev.1995.1039 ID - Kocher1995 ER - TY - JOUR AU - Salzburger, W. AU - Meyer, A. AU - Baric, S. AU - Verheyen, E. AU - Sturmbauer, C. PY - 1997 DA - 1997// TI - Phylogeny of the Lake Tanganyika cichlid species flock and its relationship to the Central and East African haplochromine cichlid fish faunas JO - Syst Biol VL - 51 UR - https://doi.org/10.1080/106351502753475907 DO - 10.1080/106351502753475907 ID - Salzburger1997 ER - TY - JOUR AU - Streelman, J. T. AU - Karl, S. A. PY - 1997 DA - 1997// TI - Reconstructing labroid evolution with single-copy nuclear DNA JO - Proc R Soc Lond B VL - 264 UR - https://doi.org/10.1098/rspb.1997.0140 DO - 10.1098/rspb.1997.0140 ID - Streelman1997 ER - TY - JOUR AU - Streelman, J. T. AU - Zardoya, R. AU - Meyer, A. AU - Karl, S. A. PY - 1998 DA - 1998// TI - Multilocus phylogeny of cichlid fishes (Pisces: Perciformes): Evolutionary comparison of microsatellite and single-copy nuclear loci JO - Mol Biol Evol VL - 15 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025985 DO - 10.1093/oxfordjournals.molbev.a025985 ID - Streelman1998 ER - TY - JOUR AU - Sultmann, H. AU - Mayer, W. E. AU - Figueroa, F. AU - Tichy, H. AU - Klein, J. PY - 1995 DA - 1995// TI - Phylogenetic analysis of cichlid fishes using nuclear-DNA markers JO - Mol Biol Evol VL - 12 ID - Sultmann1995 ER - TY - JOUR AU - Farias, I. P. AU - Orti, G. AU - Meyer, A. PY - 2000 DA - 2000// TI - Total evidence: Molecules, morphology, and the phylogenetics of cichlid fishes JO - J Exp Zool VL - 288 UR - https://doi.org/3.0.CO;2-P DO - 3.0.CO;2-P ID - Farias2000 ER - TY - JOUR AU - Klett, V. AU - Meyer, A. PY - 2002 DA - 2002// TI - What, if anything, is a Tilapia? – Mitochondrial ND2 phylogeny of tilapiines and the evolution of parental care systems in the African cichlid fishes JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004144 DO - 10.1093/oxfordjournals.molbev.a004144 ID - Klett2002 ER - TY - JOUR AU - Lippitsch, E. PY - 1995 DA - 1995// TI - Scale and squamation character polarity and phyletic assessment in the family Cichlidae JO - J Fish Biol VL - 47 UR - https://doi.org/10.1111/j.1095-8649.1995.tb01876.x DO - 10.1111/j.1095-8649.1995.tb01876.x ID - Lippitsch1995 ER - TY - JOUR AU - Sparks, J. S. AU - Smith, W. L. PY - 2004 DA - 2004// TI - Phylogeny and biogeography of cichlid fishes (Teleostei: Perciformes: Cichlidae) JO - Cladistics VL - 20 UR - https://doi.org/10.1111/j.1096-0031.2004.00038.x DO - 10.1111/j.1096-0031.2004.00038.x ID - Sparks2004 ER - TY - JOUR AU - Schliewen, U. K. AU - Stiassny, M. L. J. PY - 2003 DA - 2003// TI - Etia nguti, a new genus and species of cichlid fish from the River Mamfue, Upper Cross River basin in Cameroon, West-Central Africa JO - Ichthyol Explor Freshw VL - 14 ID - Schliewen2003 ER - TY - CHAP AU - Oliver, M. K. PY - 1984 DA - 1984// TI - Systematics of African cichlid fishes: determination of the most primitive taxon, and studies on the haplochromines of Lake Malawi (Teleostei: Chichlidae) BT - PhD thesis PB - Yale University CY - New Haven, CT ID - Oliver1984 ER - TY - CHAP AU - Stiassny, M. L. J. ED - Keenleyside, M. PY - 1991 DA - 1991// TI - Phylogenetic intrarelationships of the family Cichlidae – an overview BT - Origins of cichlids PB - Chapman and Hall CY - London ID - Stiassny1991 ER - TY - BOOK PY - 2006 DA - 2006// TI - Proceedings from the 7th International Symposium on Tilapia Aquaculture in Boca Del Rio, Vera Cruz, Mexico: September 6–8, 2006 PB - World Aquaculture Society CY - Mexico ID - ref21 ER - TY - JOUR AU - Terai, Y. AU - Takahashi, K. AU - Nishida, M. AU - T, S. AU - Okada, N. PY - 2003 DA - 2003// TI - Using SINEs to probe ancient explosive speciation: "Hidden" radiation of African cichlids JO - Mol Biol Evol VL - 20 UR - https://doi.org/10.1093/molbev/msg104 DO - 10.1093/molbev/msg104 ID - Terai2003 ER - TY - BOOK AU - Trewavas, E. PY - 1983 DA - 1983// TI - Tilapiine fishes of the genera Sarotherodon, Oreochromis and Danakilia PB - British Museum of Natural History, London CY - London ID - Trewavas1983 ER - TY - JOUR AU - Azuma, Y. AU - Kumazawa, Y. AU - Miya, M. AU - Mabuchi, K. AU - Nishida, M. PY - 2008 DA - 2008// TI - Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences JO - BMC Evol Biol VL - 8 UR - https://doi.org/10.1186/1471-2148-8-215 DO - 10.1186/1471-2148-8-215 ID - Azuma2008 ER - TY - JOUR AU - Genner, M. J. AU - Seehausen, O. AU - Lunt, D. H. AU - Joyce, D. A. AU - Shaw, P. W. AU - Carvalho, G. R. AU - Turner, G. F. PY - 2007 DA - 2007// TI - Age of cichlids: New dates for ancient lake fish radiations JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm050 DO - 10.1093/molbev/msm050 ID - Genner2007 ER - TY - JOUR AU - Vences, M. AU - Freyhof, J. AU - Sonnenberg, R. AU - Kosuch, J. AU - Veith, M. PY - 2001 DA - 2001// TI - Reconciling fossils and molecules: Cenozoic divergence of cichlid fishes and the biogeography of Madagascar JO - J Biogeogr VL - 28 UR - https://doi.org/10.1046/j.1365-2699.2001.00624.x DO - 10.1046/j.1365-2699.2001.00624.x ID - Vences2001 ER - TY - JOUR AU - Salzburger, W. AU - Mack, T. AU - Verheyen, E. AU - Meyer, A. PY - 2005 DA - 2005// TI - Out of Tanganyika: Genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes JO - BMC Evol Biol VL - 5 UR - https://doi.org/10.1186/1471-2148-5-17 DO - 10.1186/1471-2148-5-17 ID - Salzburger2005 ER - TY - JOUR AU - Koblmüller, S. AU - Sefc, K. M. AU - Sturmbauer, C. PY - 2008 DA - 2008// TI - The Lake Tanganyika cichlid species assemblage: recent advances in molecular phylogenetics JO - Hydrobiologia VL - 615 UR - https://doi.org/10.1007/s10750-008-9552-4 DO - 10.1007/s10750-008-9552-4 ID - Koblmüller2008 ER - TY - JOUR AU - Nylander, J. A. A. AU - Ronquist, F. AU - Huelsenbeck, J. P. AU - Nieves-Aldrey, J. L. PY - 2004 DA - 2004// TI - Bayesian phylogenetic analysis of combined data JO - Syst Biol VL - 53 UR - https://doi.org/10.1080/10635150490264699 DO - 10.1080/10635150490264699 ID - Nylander2004 ER - TY - JOUR AU - Thys van den Audenaerde, D. F. E. PY - 1971 DA - 1971// TI - Some new data concerning the Tilapia-species of the subgenus Coptodon(Pisces, Cichlidae) JO - Rev Zool Bot Afr VL - 84 ID - Thys van den Audenaerde1971 ER - TY - JOUR AU - Carnevale, G. L. W. AU - Sorbini, C. PY - 2003 DA - 2003// TI - Oreochromis lorenzoi, a new species of tilapiine cichlid from the late Miocene of central Italy JO - J Vert Paleontol VL - 23 UR - https://doi.org/10.1671/1858 DO - 10.1671/1858 ID - Carnevale2003 ER - TY - JOUR AU - Thys van den Audenaerde, D. F. E. PY - 1968 DA - 1968// TI - An annotated bibliography of Tilapia (Pisces, Cichlidae) JO - Ann Musee Roy Afr Centr Sci Zool VL - 14 ID - Thys van den Audenaerde1968 ER - TY - JOUR AU - Koblmüller, S. AU - Schliewen, U. K. AU - Duftner, N. AU - Sefc, K. M. AU - Katongo, C. AU - Sturmbauer, C. PY - 2008 DA - 2008// TI - Age and spread of the haplochromine cichlid fishes in Africa JO - Mol Phylogenet Evol VL - 49 UR - https://doi.org/10.1016/j.ympev.2008.05.045 DO - 10.1016/j.ympev.2008.05.045 ID - Koblmüller2008 ER - TY - JOUR AU - Joyce, D. A. AU - Lunt, D. H. AU - Bills, R. AU - Turner, G. F. AU - Katongo, C. AU - Duftner, N. AU - Sturmbauer, C. AU - Seehausen, O. PY - 2005 DA - 2005// TI - An extant cichlid fish radiation emerged in an extinct Pleistocene lake JO - Nature VL - 435 UR - https://doi.org/10.1038/nature03489 DO - 10.1038/nature03489 ID - Joyce2005 ER - TY - JOUR AU - Nagl, S. AU - Mayer, W. E. AU - Samonte, I. E. AU - McAndrew, B. J. AU - Klein, J. PY - 2001 DA - 2001// TI - Classification and phylogenetic relationships of African tilapiine fishes inferred from mitochondrial DNA sequences JO - Mol Phylogenet Evol VL - 20 UR - https://doi.org/10.1006/mpev.2001.0979 DO - 10.1006/mpev.2001.0979 ID - Nagl2001 ER - TY - JOUR AU - Collier, G. E. AU - Murphy, W. M. J. AU - Espinoza, M. PY - 2009 DA - 2009// TI - Phylogeography of the genus Epiplatys(Aplocheiloidea: Cyprinodontiformes) JO - Mol Phylogenet Evol VL - 50 UR - https://doi.org/10.1016/j.ympev.2008.10.006 DO - 10.1016/j.ympev.2008.10.006 ID - Collier2009 ER - TY - JOUR AU - Murphy, W. J. AU - Collier, G. E. PY - 1997 DA - 1997// TI - A molecular phylogeny for aplocheiloid fishes (Atherinomorpha, Cyprinodontiformes): The role of vicariance and the origins of annualism JO - Mol Biol Evol VL - 14 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025819 DO - 10.1093/oxfordjournals.molbev.a025819 ID - Murphy1997 ER - TY - JOUR AU - Giresse, P. PY - 2005 DA - 2005// TI - Mesozoic-Cenozoic history of the Congo Basin JO - J Afr Earth Sci VL - 43 UR - https://doi.org/10.1016/j.jafrearsci.2005.07.009 DO - 10.1016/j.jafrearsci.2005.07.009 ID - Giresse2005 ER - TY - JOUR AU - Reyment, R. A. AU - Dingle, R. V. PY - 1987 DA - 1987// TI - Paleogeography of Africa During the Cretaceous Period JO - Palaeogeogr Palaeoclimatol Palaeoecol VL - 59 UR - https://doi.org/10.1016/0031-0182(87)90076-9 DO - 10.1016/0031-0182(87)90076-9 ID - Reyment1987 ER - TY - JOUR AU - Loader, S. P. AU - Pisani, D. AU - Cotton, J. A. AU - Gower, D. J. AU - Day, J. J. AU - Wilkinson, M. PY - 2007 DA - 2007// TI - Relative time scales reveal multiple origins of parallel disjunct distributions of African caecilian amphibians JO - Biol Lett VL - 3 UR - https://doi.org/10.1098/rsbl.2007.0266 DO - 10.1098/rsbl.2007.0266 ID - Loader2007 ER - TY - JOUR AU - Davis, C. C. AU - Bell, C. D. AU - Fritsch, P. W. AU - Mathews, S. PY - 2002 DA - 2002// TI - Phylogeny of Acridocarpus-brachylophon (Malpighiaceae): Implications for tertiary tropical floras and afroasian biogeography JO - Evolution VL - 56 UR - https://doi.org/10.1111/j.0014-3820.2002.tb00165.x DO - 10.1111/j.0014-3820.2002.tb00165.x ID - Davis2002 ER - TY - JOUR AU - Couvreur, T. L. P. AU - Chatrou, L. W. AU - Sosef, M. S. M. AU - Richardson, J. E. PY - 2008 DA - 2008// TI - Molecular phylogenetics reveal multiple tertiary vicariance origins of the African rain forest trees JO - BMC Biol VL - 6 UR - https://doi.org/10.1186/1741-7007-6-54 DO - 10.1186/1741-7007-6-54 ID - Couvreur2008 ER - TY - JOUR AU - Cohen, A. S. AU - Soreghan, M. J. AU - Scholz, C. A. PY - 1993 DA - 1993// TI - Estimating the age of formation of lakes – an example from Lake Tanganyika, East-African Rift System JO - Geology VL - 21 UR - https://doi.org/2.3.CO;2 DO - 2.3.CO;2 ID - Cohen1993 ER - TY - JOUR AU - Koblmüller, S. AU - Duftner, N. AU - Katongo, C. AU - Phiri, H. AU - C, S. PY - 2005 DA - 2005// TI - Ancient divergence in bathypelagic Lake Tanganyika deepwater cichlids: Mitochondrial phylogeny of the tribe Bathybatini JO - J Mol Evol VL - 60 UR - https://doi.org/10.1007/s00239-004-0033-8 DO - 10.1007/s00239-004-0033-8 ID - Koblmüller2005 ER - TY - JOUR AU - Stiassny, M. L. J. PY - 1990 DA - 1990// TI - Tylochromis, relationships and the phylogenetic status of the African Cichlidae JO - Am Mus Novit VL - 2993 ID - Stiassny1990 ER - TY - JOUR AU - Misof, B. AU - Misof, K. PY - 2009 DA - 2009// TI - A Monte Carlo approach successfully identifies randomness of multiple sequence alignments: A more objective means of data exclusion JO - Syst Biol VL - 58 UR - https://doi.org/10.1093/sysbio/syp006 DO - 10.1093/sysbio/syp006 ID - Misof2009 ER - TY - JOUR AU - Huelsenbeck, J. P. AU - Ronquist, F. PY - 2001 DA - 2001// TI - MrBAYES: Bayesian inference of phylogenetic trees JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.8.754 DO - 10.1093/bioinformatics/17.8.754 ID - Huelsenbeck2001 ER - TY - JOUR AU - Stamatakis, A. PY - 2006 DA - 2006// TI - RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl446 DO - 10.1093/bioinformatics/btl446 ID - Stamatakis2006 ER - TY - JOUR AU - Thorley, J. L. AU - Wilkinson, M. PY - 1999 DA - 1999// TI - Testing the phylogenetic stability of early tetrapods JO - J Theor Biol VL - 200 UR - https://doi.org/10.1006/jtbi.1999.0999 DO - 10.1006/jtbi.1999.0999 ID - Thorley1999 ER - TY - JOUR AU - Smith, S. A. AU - Dunn, C. W. PY - 2008 DA - 2008// TI - Phyutility: a phyloinformatics tool for trees, alignments and molecular data JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btm619 DO - 10.1093/bioinformatics/btm619 ID - Smith2008 ER - TY - JOUR AU - Seehausen, O. PY - 2004 DA - 2004// TI - Hybridization and adaptive radiation JO - Trends Ecol Evol VL - 19 UR - https://doi.org/10.1016/j.tree.2004.01.003 DO - 10.1016/j.tree.2004.01.003 ID - Seehausen2004 ER - TY - JOUR AU - Krijgsman, W. AU - Hilgen, F. J. AU - Marabini, S. AU - B, V. G. PY - 1999 DA - 1999// TI - New palaomagnetic and cyclostratigraphic age constraints on the Messinian of the Northern Apennines (Vena del Gesso Basin, Italy) JO - Mem Soc Geol It VL - 54 ID - Krijgsman1999 ER - TY - JOUR AU - Drummond, A. J. AU - Ho, S. AU - Philipps, M. AU - Rambaut, A. PY - 2006 DA - 2006// TI - Relaxed phylogenetics and dating with confidence JO - PLoS Biol VL - 4 UR - https://doi.org/10.1371/journal.pbio.0040088 DO - 10.1371/journal.pbio.0040088 ID - Drummond2006 ER - TY - JOUR AU - Drummond, A. J. AU - Rambaut, A. PY - 2007 DA - 2007// TI - BEAST: Bayesian evolutionary analysis by sampling trees JO - BMC Evol Biol VL - 7 UR - https://doi.org/10.1186/1471-2148-7-214 DO - 10.1186/1471-2148-7-214 ID - Drummond2007 ER - TY - STD TI - Tracer v1.4. [http://beast.bio.ed.ac.uk/tracer] UR - http://beast.bio.ed.ac.uk/tracer ID - ref55 ER - TY - JOUR AU - Sanderson, M. J. PY - 2002 DA - 2002// TI - Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003974 DO - 10.1093/oxfordjournals.molbev.a003974 ID - Sanderson2002 ER - TY - JOUR AU - Sanderson, M. J. PY - 2003 DA - 2003// TI - r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/19.2.301 DO - 10.1093/bioinformatics/19.2.301 ID - Sanderson2003 ER -