TY - JOUR AU - Bateman, A. AU - Bycroft, M. PY - 2000 DA - 2000// TI - The structure of a LysM domain from E. colimembrane-bound lytic murein transglycosylase D (MltD) JO - J Mol Biol VL - 299 UR - https://doi.org/10.1006/jmbi.2000.3778 DO - 10.1006/jmbi.2000.3778 ID - Bateman2000 ER - TY - JOUR AU - Zhang, X. C. AU - Wu, X. L. AU - Findley, S. AU - Wan, J. R. AU - Libault, M. AU - Nguyen, H. T. AU - Cannon, S. B. AU - Stacey, G. PY - 2007 DA - 2007// TI - Molecular evolution of lysin motif-type receptor-like kinases in plants JO - Plant Physiol VL - 144 UR - https://doi.org/10.1104/pp.107.097097 DO - 10.1104/pp.107.097097 ID - Zhang2007 ER - TY - JOUR AU - Bielnicki, J. AU - Devedjiev, Y. AU - Derewenda, U. AU - Dauter, Z. AU - Joachimiak, A. AU - Derewenda, Z. S. PY - 2006 DA - 2006// TI - B. subtilisykuD protein at 2.0 A resolution: insights into the structure and function of a novel, ubiquitous family of bacterial enzymes JO - Proteins VL - 62 UR - https://doi.org/10.1002/prot.20702 DO - 10.1002/prot.20702 ID - Bielnicki2006 ER - TY - JOUR AU - Mulder, L. AU - Lefebvre, B. AU - Cullimore, J. AU - Imberty, A. PY - 2006 DA - 2006// TI - LysM domains of Medicago truncatulaNFP protein involved in Nod factor perception. Glycosylation state, molecular modeling and docking of chitooligosaccharides and Nod factors JO - Glycobiol VL - 16 UR - https://doi.org/10.1093/glycob/cwl006 DO - 10.1093/glycob/cwl006 ID - Mulder2006 ER - TY - JOUR AU - Nickson, A. A. AU - Stoll, K. E. AU - Clarke, J. PY - 2008 DA - 2008// TI - Folding of a LysM domain: entropy-enthalpy compensation in the transition state of an ideal two-state folder JO - J Mol Biol VL - 380 UR - https://doi.org/10.1016/j.jmb.2008.05.020 DO - 10.1016/j.jmb.2008.05.020 ID - Nickson2008 ER - TY - JOUR AU - Jerse, A. E. AU - Yu, J. AU - Tall, B. D. AU - Kaper, J. B. PY - 1990 DA - 1990// TI - A genetic locus of enteropathogenic Escherichia colinecessary fro the production of attaching and effacting lesions on tissue culture cells JO - Proc Nat Acad Sci USA VL - 87 UR - https://doi.org/10.1073/pnas.87.20.7839 DO - 10.1073/pnas.87.20.7839 ID - Jerse1990 ER - TY - JOUR AU - Ponting, C. P. AU - Aravind, L. AU - Schultz, J. AU - Bork, P. AU - Koonin, E. V. PY - 1999 DA - 1999// TI - Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer JO - J Mol Biol VL - 289 UR - https://doi.org/10.1006/jmbi.1999.2827 DO - 10.1006/jmbi.1999.2827 ID - Ponting1999 ER - TY - JOUR AU - Kaku, H. AU - Nishizawa, Y. AU - Ishii-Minami, N. AU - Akimoto-Tomiyama, C. AU - Dohmae, N. AU - Takio, K. AU - Minami, E. AU - Shibuya, N. PY - 2006 DA - 2006// TI - Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor JO - Proc Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0508882103 DO - 10.1073/pnas.0508882103 ID - Kaku2006 ER - TY - JOUR AU - Miya, A. AU - Albert, P. AU - Shinya, T. AU - Desaki, Y. AU - Ichimura, K. AU - Shirasu, K. AU - Narusaka, Y. AU - Kawakami, N. AU - Kaku, H. AU - Shibuya, N. PY - 2007 DA - 2007// TI - CERK1, a LysM receptor kinase, is essential for chitin signaling in Arabidopsis JO - Proc Nat Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0705147104 DO - 10.1073/pnas.0705147104 ID - Miya2007 ER - TY - JOUR AU - Wan, J. AU - Zhang, X. C. AU - Neece, D. AU - Ramonell, K. M. AU - Clough, S. AU - Kim, S. Y. AU - Stacey, M. G. AU - Stacey, G. PY - 2008 DA - 2008// TI - A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis JO - Plant Cell VL - 20 UR - https://doi.org/10.1105/tpc.107.056754 DO - 10.1105/tpc.107.056754 ID - Wan2008 ER - TY - JOUR AU - Limpens, E. AU - Franken, C. AU - Smit, P. AU - Willemse, J. AU - Bisseling, T. AU - Geurts, R. PY - 2003 DA - 2003// TI - LysM domain receptor kinases regulating rhizobial Nod factor-induced infection JO - Science VL - 302 UR - https://doi.org/10.1126/science.1090074 DO - 10.1126/science.1090074 ID - Limpens2003 ER - TY - JOUR AU - Madsen, E. B. AU - Madsen, L. H. AU - Radutoiu, S. AU - Olbryt, M. AU - Rakwalska, M. AU - Szczyglowski, K. AU - Sato, S. AU - Kaneko, T. AU - Tabata, S. AU - Sandal, N. PY - 2003 DA - 2003// TI - A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals JO - Nature VL - 425 UR - https://doi.org/10.1038/nature02045 DO - 10.1038/nature02045 ID - Madsen2003 ER - TY - JOUR AU - Radutoiu, S. AU - Madsen, L. H. AU - Madsen, E. B. AU - Felle, H. H. AU - Umehara, Y. AU - Gronlund, M. AU - Sato, S. AU - Nakamura, Y. AU - Tabata, S. AU - Sandal, N. PY - 2003 DA - 2003// TI - Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases JO - Nature VL - 425 UR - https://doi.org/10.1038/nature02039 DO - 10.1038/nature02039 ID - Radutoiu2003 ER - TY - JOUR PY - 2005 DA - 2005// TI - The map-based sequence of the rice genome JO - Nature VL - 436 UR - https://doi.org/10.1038/nature03895 DO - 10.1038/nature03895 ID - ref14 ER - TY - JOUR AU - Rizzon, C. AU - Ponger, L. AU - Gaut, B. S. PY - 2006 DA - 2006// TI - Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice JO - PLoS Computational Biol VL - 2 UR - https://doi.org/10.1371/journal.pcbi.0020115 DO - 10.1371/journal.pcbi.0020115 ID - Rizzon2006 ER - TY - JOUR AU - Tuskan, G. A. AU - Difazio, S. AU - Jansson, S. AU - Bohlmann, J. AU - Grigoriev, I. AU - Hellsten, U. AU - Putnam, N. AU - Ralph, S. AU - Rombauts, S. AU - Salamov, A. PY - 2006 DA - 2006// TI - The genome of black cottonwood, Populus trichocarpa(Torr. & Gray) JO - Science VL - 313 UR - https://doi.org/10.1126/science.1128691 DO - 10.1126/science.1128691 ID - Tuskan2006 ER - TY - JOUR AU - Blanc, G. AU - Wolfe, K. H. PY - 2004 DA - 2004// TI - Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes JO - Plant Cell VL - 16 UR - https://doi.org/10.1105/tpc.021345 DO - 10.1105/tpc.021345 ID - Blanc2004 ER - TY - JOUR AU - Bowers, J. E. AU - Chapman, B. A. AU - Rong, J. AU - Paterson, A. H. PY - 2003 DA - 2003// TI - Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events JO - Nature VL - 422 UR - https://doi.org/10.1038/nature01521 DO - 10.1038/nature01521 ID - Bowers2003 ER - TY - JOUR AU - Pfeil, B. E. AU - Schlueter, J. A. AU - Shoemaker, R. C. AU - Doyle, J. J. PY - 2005 DA - 2005// TI - Placing paleopolyploidy in relation to taxon divergence: A phylogenetic analysis in legumes using 39 gene families JO - System Biol VL - 54 UR - https://doi.org/10.1080/10635150590945359 DO - 10.1080/10635150590945359 ID - Pfeil2005 ER - TY - JOUR AU - Lynch, M. AU - Connery, J. S. PY - 2000 DA - 2000// TI - The evolutionary fate and consequences of duplicate genes JO - Science VL - 209 UR - https://doi.org/10.1126/science.290.5494.1151 DO - 10.1126/science.290.5494.1151 ID - Lynch2000 ER - TY - JOUR AU - Vision, T. J. AU - Brown, D. G. AU - Tanksley, S. D. PY - 2000 DA - 2000// TI - The origins of genomic duplications in Arabidopsis JO - Science VL - 290 UR - https://doi.org/10.1126/science.290.5499.2114 DO - 10.1126/science.290.5499.2114 ID - Vision2000 ER - TY - JOUR AU - Blanc, G. AU - Hokamp, K. AU - Wolfe, K. H. PY - 2008 DA - 2008// TI - A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.751803 DO - 10.1101/gr.751803 ID - Blanc2008 ER - TY - JOUR AU - Schlueter, J. A. AU - Dixon, P. AU - Granger, C. AU - Grant, D. AU - Clark, L. AU - Doyle, J. J. AU - Shoemaker, R. C. PY - 2004 DA - 2004// TI - Mining EST databases to resolve evolutionary events in major crop species JO - Genome VL - 47 UR - https://doi.org/10.1139/g04-047 DO - 10.1139/g04-047 ID - Schlueter2004 ER - TY - JOUR AU - Yang, Y. W. AU - Lai, K. N. AU - Tai, P. Y. AU - Li, W. H. PY - 1999 DA - 1999// TI - Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassicaand other angiosperm lineages JO - J Mol Evol VL - 48 UR - https://doi.org/10.1007/PL00006502 DO - 10.1007/PL00006502 ID - Yang1999 ER - TY - JOUR AU - Lavin, M. AU - Herendeen, P. S. AU - Wojciechowski, M. F. PY - 2005 DA - 2005// TI - Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary JO - System Biol VL - 54 UR - https://doi.org/10.1080/10635150590947131 DO - 10.1080/10635150590947131 ID - Lavin2005 ER - TY - JOUR AU - Onaga, S. AU - Taira, T. PY - 2008 DA - 2008// TI - A new type of plant chitinase containing LysM domains from a fern (Pteris ryukyuensis): roles of LysM domains in chitin binding and antifungal activity JO - Glycobiol VL - 18 UR - https://doi.org/10.1093/glycob/cwn018 DO - 10.1093/glycob/cwn018 ID - Onaga2008 ER - TY - JOUR AU - Ponting, C. P. AU - Hofmann, K. AU - Bork, P. PY - 1999 DA - 1999// TI - A latrophilin/CL-1-like GPS domain in polycystin-1 JO - Curr biol VL - 26 UR - https://doi.org/10.1016/S0960-9822(99)80379-0 DO - 10.1016/S0960-9822(99)80379-0 ID - Ponting1999 ER - TY - JOUR AU - Sasaki, G. AU - Katoh, K. AU - Hirose, N. AU - Suga, H. AU - Kuma, K. AU - Miyata, T. AU - Su, Z. H. PY - 2007 DA - 2007// TI - Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes JO - Gene VL - 401 UR - https://doi.org/10.1016/j.gene.2007.07.009 DO - 10.1016/j.gene.2007.07.009 ID - Sasaki2007 ER - TY - JOUR AU - Bowe, L. M. AU - Coat, G. AU - dePamphilis, C. W. PY - 2000 DA - 2000// TI - Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers JO - Proc Nat Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.97.8.4092 DO - 10.1073/pnas.97.8.4092 ID - Bowe2000 ER - TY - JOUR AU - Gust, A. A. AU - Biswas, R. AU - Lenz, H. D. AU - Rauhut, T. AU - Ranf, S. AU - Kemmerling, B. AU - Gotz, F. AU - Glawischnig, E. AU - Lee, J. AU - Felix, G. PY - 2007 DA - 2007// TI - Bacteria-derived peptidoglycans constitute pathogen-associated molecular patterns triggering innate immunity in Arabidopsis JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M704886200 DO - 10.1074/jbc.M704886200 ID - Gust2007 ER - TY - JOUR AU - Da Silva, C. A. AU - Hartl, D. AU - Liu, W. AU - Lee, C. AU - Elias, J. A. PY - 2008 DA - 2008// TI - TLR-2 and IL-17A in chitin-induced macrophage activation and acute inflammation JO - J Immunol VL - 181 UR - https://doi.org/10.4049/jimmunol.181.6.4279 DO - 10.4049/jimmunol.181.6.4279 ID - Da Silva2008 ER - TY - JOUR AU - Arrighi, J. AU - Barre, A. AU - Ben Amor, B. AU - Bersoult, A. AU - Soriano, L. AU - Mirabella, R. AU - Carvalho-Niebel, F. AU - Journet, E. AU - Gherardi, M. AU - Huguet, T. PY - 2006 DA - 2006// TI - The Medicago truncatulalysin motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes JO - Plant Physiol VL - 142 UR - https://doi.org/10.1104/pp.106.084657 DO - 10.1104/pp.106.084657 ID - Arrighi2006 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Clamp, M. AU - Cuff, J. AU - Searle, S. M. AU - Barton, G. J. PY - 2004 DA - 2004// TI - The Jalview Java alignment editor JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg430 DO - 10.1093/bioinformatics/btg430 ID - Clamp2004 ER - TY - CHAP AU - Felsenstein, J. PY - 2000 DA - 2000// TI - PHYLIP (Phylogeny Inference Package) BT - Distributed by the Author PB - Department of Genetics, University of Washington CY - Seattle ID - Felsenstein2000 ER - TY - JOUR AU - Schmidt, H. A. AU - Strimmer, K. AU - Vingron, M. AU - von Haeseler, A. PY - 2002 DA - 2002// TI - TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.3.502 DO - 10.1093/bioinformatics/18.3.502 ID - Schmidt2002 ER - TY - JOUR AU - Zmasek, C. M. AU - Eddy, S. R. PY - 2001 DA - 2001// TI - ATV: display and manipulation of annotated phylogenetic trees JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.4.383 DO - 10.1093/bioinformatics/17.4.383 ID - Zmasek2001 ER - TY - JOUR AU - Yang, Z. PY - 1997 DA - 1997// TI - PAML: a program package for phylogenetic analysis by maximum likelihood JO - Computer Applications in BioSciences VL - 13 ID - Yang1997 ER -