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Table 1 Genomes containing multiple copies of the S4 gene

From: Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4

Organism Name

Taxon

# copies

PID(%)

Classification

Other Zn-ribbon duplicatesa

Frankia sp. EAN1pec

Actinobacteria

2

40.57

C+b; C-(IV)

 

Salinispora arenicola CNS-205

 

2

36.79

C+; C-(IV)

S14, L33, L28c, L31, L32

Salinispora tropica CNB-440

 

2

36.32

C+; C-(IV)

S14, L33, L28c, L31, L32

Methylobacillus flagellatus KT

β-proteobacteria

2

100.0

both C-(IV)

L36

Nitrosomonas europaea ATCC 19718

 

2

36.62

C+; C-(IV)

 

Psychromonas ingrahamii 37

γ-proteobacteria

2

99.51

both C-(I)

L36d

Bdellovibrio bacteriovorus HD100

δ-proteobacteria

2

39.35

C+; C-(IV)

 

Myxococcus xanthus DK 1622

 

2

36.41

C+; C-(IV)

S14, L33, L28c

Sorangium cellulosum 'So ce 56'

 

2

42.45

C+; C-(IV)

 

Alkaliphilus metalliredigens QYMF

Clostridia

3

38.53e

C+; C-(V)f

 

Alkaliphilus oremlandii OhILAs

 

2

40.00

C+; C-(V)

 

Clostridium acetobutylicum ATCC 824

 

3

38.61e

C+; C-(V)f

 

Clostridium botulinum A str. ATCC 3502

 

2

38.79

C+; C-(V)

 

Clostridium botulinum A3 str. Loch Maree

 

2

37.38

C+; C-(V)

 

Clostridium botulinum A str. ATCC 19397

 

2

38.79

C+; C-(V)

 

Clostridium botulinum A str. Hall

 

2

38.79

C+; C-(V)

 

Clostridium botulinum B1 str. Okra

 

2

38.79

C+; C-(V)

 

Clostridium botulinum F str. Langeland

 

2

39.25

C+; C-(V)

 

Clostridium kluyveri DSM 555

 

2

39.25

C+; C-(V)

 

Clostridium novyi NT

 

2

40.38

C+; C-(V)

 

Clostridium perfringens str. 13

 

2

38.79

C+; C-(V)

 

Clostridium perfringens ATCC 13124

 

2

38.79

C+; C-(V)

 

Clostridium perfringens SM101

 

2

38.79

C+; C-(V)

 

Leptospira borgpetersenii serovar

Spirochaetes

2

100.0

both C-(III)

S14, L36g

Hardjo-bovis L550

     

Gemmata obscuriglobus UQM 2246

Planctomycetes

2

40.95

C+; C-(IV)

 
  1. aObservations based on annotation.
  2. bClassification written in bold indicates that it is inside the α-operon.
  3. cThe duplicates of the zinc-binding r-proteins S14, L28, L33 sit together in the genome.
  4. dResulting from the duplication of the whole α-operon.
  5. eAverage value of the percent identities of the two pairs of in-operon and out-of-operon copies.
  6. fA. metalliredigens and C. acetobutylicum have 2 copies of the C-(V) form.
  7. gResulting from the duplication of the entire s10-spc and α-operon.
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BMC Ecology and Evolution

ISSN: 2730-7182

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