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Table 4 Missclassified wild individuals or putative hybrids detected by Geneclass and Structure analyses.

From: Current genetic differentiation of Coffea canephoraPierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities

 

A priori Genetic Group

Geneclass

  

Structure

  
  

RFLP

SSR

RFLP

 

SSR

 

Individuals

   

Ancestry (%)

CI

Ancestry (%)

CI

AC663

A

E 1.445

 

E 43.5

A 39

B 14.2

0–100

0–100

0–61

  

CC604

C

-

E 3.224

 

-

E 49.1

C 47.4

23.3–76.2

18.4–73.5

CC658

C

-

D 5.010

 

-

D 56.3

A 21.2

24.8–83.6

0–71.9

DC186

D

-

-

D 64

E 16

A 16

36.1–86.5

0–52.8

0–54.2

D 57.9

A 33.5

29.6–84

0–68.3

DC194

D

-

-

D 37.5

E 29.6

A 31.6

0–66.1

0–85.8

0–94.2

D 72.6

E 25.3

48.3–94.4

0–50.3

DC345

D

A 0.579

E 0.526

D 33.7

E 30

A 34.3

0–65.2

0–97.3

0–997

D 51.5

E 38.7

26.7–74.7

12.9–65.2

DC350

D

-

E 1.553

D 54.5

E 20.7

A 21.7

0–87.1

0–75.5

0–91.7

D 42.4

E 51.6

19.8–65.5

14.2–76.9

DC358

D

-

-

D 49.9

E 21

A 21.5

12.1–77.9

0–66.6

0–68.5

D 64.3

E 21.2

42.6–83.7

0–51.2

  1. The alternative group and log10 L_home/L_max from the Geneclass analysis is given. The Structure results are given for the percentage of admixture (mean ancestry) of each of the five diversity groups and the 90% CI. Cells are kept empty for individual non-detected hybrids, i.e. over 80% membership to their own cluster.