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Table 5 Sequences used for phylogenetic analysis and substitution rate calculations

From: Independent inactivation of arginine decarboxylase genes by nonsense and missense mutations led to pseudogene formation in Chlamydia trachomatisserovar L2 and D strains

Strain Chromosomal locus and GenBank RefSeq accession number
  aaxA aaxB aaxC
Chlamydia abortus S26/31 CAB696
[YP_220094.1] 		CAB697
[YP_220095.1] 		CAB698
[YP_220096.1]
Chlamydia caviae GPIC1 CCA00729
[NP_829592.1] 		CCA00730
[NP_829593.1] 		CCA00731
[NP_829594.1]
Chlamydia felis
Fe/C-561 		CF0287
[YP_515204.1] 		CF0286
[YP_515203.1] 		CF0285
[YP_515202.1]
Chlamydia muridarum Nigg TC0651
[NP_297025.1] 		TC0652
[NP_297026.1] 		TC0653
[NP_297027.1]
Chlamydia pneumoniae CWL0291 CPn1033
[NP_225227.1] 		CPn1032
[NP_225226.1] 		CPn1031
[NP_225225.1]
Chlamydia trachomatis A/HAR-13 CTA_0404
[YP_328186.1] 		CTA_0405
[YP_328187.1] 		(CTA_0406)3
Chlamydia trachomatis B/Jali NA2 NA2 NA2,3
Chlamydia trachomatis D/UW-3 CT372
[NP_219881.1] 		CT373
[NP_219882.1] 		CT374
[NP_219883.1]
Chlamydia trachomatis L2/434 CTL0626
[YP_001654701.1] 		(CTL0627)3 CTL0628
[YP_001654702.1]
Chlamydia trachomatis L2b/UCH CTLon_0624
[YP_001653713.1] 		(CTLon_0625)3 CTLon_0626
[YP_001653714.1]
  1. 1 These species are sometimes considered part of the Chlamydophila genus.
  2. 2 Not available. The unannotated C. trachomatis B/Jali genome sequence was retrieved from the Sanger Institute website http://www.sanger.ac.uk/Projects/C_trachomatis/.
  3. 3 The aaxB pseudogenes in LGV strains and the aaxC pseudogenes in C. trachomatis HAR-13 and Jali strains were not assigned GenBank accession numbers.
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BMC Ecology and Evolution

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