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Table 5 Sequences used for phylogenetic analysis and substitution rate calculations

From: Independent inactivation of arginine decarboxylase genes by nonsense and missense mutations led to pseudogene formation in Chlamydia trachomatisserovar L2 and D strains

Strain Chromosomal locus and GenBank RefSeq accession number
  aaxA aaxB aaxC
Chlamydia abortus S26/31 CAB696
[YP_220094.1]
CAB697
[YP_220095.1]
CAB698
[YP_220096.1]
Chlamydia caviae GPIC1 CCA00729
[NP_829592.1]
CCA00730
[NP_829593.1]
CCA00731
[NP_829594.1]
Chlamydia felis
Fe/C-561
CF0287
[YP_515204.1]
CF0286
[YP_515203.1]
CF0285
[YP_515202.1]
Chlamydia muridarum Nigg TC0651
[NP_297025.1]
TC0652
[NP_297026.1]
TC0653
[NP_297027.1]
Chlamydia pneumoniae CWL0291 CPn1033
[NP_225227.1]
CPn1032
[NP_225226.1]
CPn1031
[NP_225225.1]
Chlamydia trachomatis A/HAR-13 CTA_0404
[YP_328186.1]
CTA_0405
[YP_328187.1]
(CTA_0406)3
Chlamydia trachomatis B/Jali NA2 NA2 NA2,3
Chlamydia trachomatis D/UW-3 CT372
[NP_219881.1]
CT373
[NP_219882.1]
CT374
[NP_219883.1]
Chlamydia trachomatis L2/434 CTL0626
[YP_001654701.1]
(CTL0627)3 CTL0628
[YP_001654702.1]
Chlamydia trachomatis L2b/UCH CTLon_0624
[YP_001653713.1]
(CTLon_0625)3 CTLon_0626
[YP_001653714.1]
  1. 1 These species are sometimes considered part of the Chlamydophila genus.
  2. 2 Not available. The unannotated C. trachomatis B/Jali genome sequence was retrieved from the Sanger Institute website http://www.sanger.ac.uk/Projects/C_trachomatis/.
  3. 3 The aaxB pseudogenes in LGV strains and the aaxC pseudogenes in C. trachomatis HAR-13 and Jali strains were not assigned GenBank accession numbers.