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Table 1 The distribution of SMR homologues into each of the three SMR protein family subclasses within Archaea and Bacteria.

From: Diversity and evolution of the small multidrug resistance protein family

 

SMR subclass members (%)

   
 

SMP

SUG

PSMRc

    

Qacd

   

Archaeal and Bacterial Classes

  

A

B

C

D

E

 

Total number SMR/Bacteria

Total number species with SMR

Mean SMR/species

Euryarchaeota

30

40

    

30

 

10

10

1

Halobacteria

60

40

      

5

5

1

Methanomicrobia

 

40

    

60

 

5

5

1

Bacteria

28

32

11

7

8

3

6

4

675

330

2

Actinobacteria

6

43

 

48

   

4

54

28

2

Bacilli

 

13

 

12

32

25

14

5

81

22

4

Lactobacilli

 

59

 

18

24

   

17

11

2

Bacteroidetes

 

100

      

4

4

1

Chlorobia

7

53

    

40

 

15

9

2

Flavobacteria

20

80

      

5

4

1

Clostridia

 

36

 

9

18

 

36

 

11

7

2

Cyanophyceae

43

14

 

19

  

24

 

21

15

1

Deinococci

 

63

25

13

    

6

3

2

Chlamydiales

 

100

      

2

2

1

Planctomycetacia

 

50

 

50

    

3

3

1

Chloroflexi

43

  

14

  

43

 

8

7

1

α-proteobacteria

48

45

4

   

2

1

100

63

2

β-proteobacteria

42

42

7

   

6

3

71

36

2

γ-proteobacteria

41

25

21

 

2

 

2

9

213

95

2

δ-proteobacteria

21

52

21

   

7

 

29

13

2

ε-proteobacteria

 

6

40

 

54

   

35

11

3

Total number of sequenced organisms surveyed with SMR

         

340

 

Total number of sequenced organisms surveyed

         

988

 

Percentage of sequenced organisms with SMR (%)

         

34

 
  1. The number of SMR sequences for each kingdom and class are indicated by percentage.
  2. a The number of SMR sequences for each kingdom and class are indicated as a percentage of the total number identified.
  3. b yvaE genes are only paired with yvaD genes among Bacilli and Lactobacilli.
  4. c PSMR pairs are indicated as follows corresponding to the indicated letter: ydgE and ydgF(A), ebrA and ebrB (B), ykkC and ykkD (C), yvdR and yvdS (D), and yvaE and yvaD (E)
  5. d Qac refers to integron and plasmid derived seqeunces only.