Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus

Table 4 SNP data, summary statistics and tests of neutrality

Test	N¹	S²	H³	Hd ⁴	Π ⁵	θ _w ⁶	Tajima's D	Fu & Li's		Fay & Wu's H	Fu's F_s
								D	F
All	90	100	115	0.990	5.19	3.37	1.69	1.22	1.86	-21.40	-34.06
P value			<0.001	<0.001	ns	0.001	<0.001	0.027	<0.001	0.010	0.015
Asia	30	95	51	0.993	5.37	3.89	1.32	1.25	1.68	-19.45	-16.06
P value			<0.001	0.007	ns	0.005	<0.001	<0.001	0.009	0.008	0.012
Africa	40	86	53	0.983	4.72	3.36	1.36	1.11	1.55	-27.34	-10.13
P value			ns	ns	ns	0.002	0.001	0.031	0.002	0.002	ns
Broilers	20	79	23	0.944	5.14	3.51	1.69	2.15	2.47	-10.85	1.38
P value			0.010	0.003	ns	0.018	<0.001	<0.001	<0.001	ns	0.007

¹ Chickens sampled. ² SNPs. ³ Haplotypes. ⁴ Haplotype diversity. ⁵ Mean pairwise differences per kb. ⁶ Watterson's estimator per kb. Only p values generated by simulations < 0.05 are given; p > 0.05 are denoted "ns". The resequenced region length is 5,298 bp.

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