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Table 4 SNP data, summary statistics and tests of neutrality

From: Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus

Test N1 S2 H3 Hd 4 Π 5 θ w 6 Tajima's D Fu & Li's Fay & Wu's H Fu's F s
         D F   
All 90 100 115 0.990 5.19 3.37 1.69 1.22 1.86 -21.40 -34.06
P value    <0.001 <0.001 ns 0.001 <0.001 0.027 <0.001 0.010 0.015
Asia 30 95 51 0.993 5.37 3.89 1.32 1.25 1.68 -19.45 -16.06
P value    <0.001 0.007 ns 0.005 <0.001 <0.001 0.009 0.008 0.012
Africa 40 86 53 0.983 4.72 3.36 1.36 1.11 1.55 -27.34 -10.13
P value    ns ns ns 0.002 0.001 0.031 0.002 0.002 ns
Broilers 20 79 23 0.944 5.14 3.51 1.69 2.15 2.47 -10.85 1.38
P value    0.010 0.003 ns 0.018 <0.001 <0.001 <0.001 ns 0.007
  1. 1 Chickens sampled. 2 SNPs. 3 Haplotypes. 4 Haplotype diversity. 5 Mean pairwise differences per kb. 6 Watterson's estimator per kb. Only p values generated by simulations < 0.05 are given; p > 0.05 are denoted "ns". The resequenced region length is 5,298 bp.