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Table 2 Number of network-related orthologous gene groups in which gene duplication by the 3R-WGD was detected.

From: Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication

 

LTP

TT

OT

TCA

Grand total1

Total # of identified relationships

58

22

22

27

116

   1:1 orthologs

36

14

10

20

71

   Duplicated by 3R-WGD

22

8

12

7

45

3R-WGD-derived duplicate-loci/total gene loci in CA

55.00%

53.30%

70.60%

41.20%

56.50%

 

(44/80)

(16/30)

(24/34)

(14/34)

(90/161)

# of 3R-WGD-derived pairs retained in current genome(s)

     

   One genome

1

1

2

1

5

   Two genomes

10

4

5

2

20

   Three genomes

7

2

4

3

15

   Four genomes

4

1

1

1

5

  1. 1Overlaps between genes that were involved in more than one network were controlled.
  2. Abbreviations: LPT, long-term potentiation; TT, taste transduction; OT, olfactory transduction; TCA, TCA cycle; 3R-WGD, third-round whole genome duplication; CA, common ancestor of zebrafish, medaka, stickleback, and Tetraodon.