Table 3 Sites under PDS in the A. thaliana/P. trichocarpa ARF gene family: „Site-specific analysis".
Site-specific analyses | n | dN/dS (ω) under M0 | 2Δℓ M2 vs. M1 (df 2) | 2Δℓ M8 vs. M7 (df 2) | Parameter estimates under M8 | Positively selected sites under M2 (BEB) | Positively selected sites under M8 (BEB) |
|---|---|---|---|---|---|---|---|
ARF | |||||||
Node ARF2 | 5 | 0.183 | 0.00 | 0.56 | ρ0 = 0.957 (ρ1 = 0.043) (ρ = 0.431) q = 1.635 ω = 1.09 | None | 478 540 563 631 758 |
Node ARF6 | 7 | 0.122 | 0.00 | 1.04 | ρ0 = 0.997 (ρ1 = 0.003) (ρ = 0.355) q = 1.994 ω = 4.49 | None | 372 464 476 479 482 485 539 |
Node ARF7 | 6 | 0.154 | 0.00 | 13.78** | ρ0 = 0.973 (ρ1 = 0.027) (ρ = 0.409) q = 1.814 ω = 3.086 | None | 460 526 532 534 539 542 544 546 550 556 557 558 559 561 562 566 568 569 570 574 599 608 677 785 |
Node ARF10 | 8 | 0.137 | 0.00 | 0.64 | ρ0 = 0.998 (ρ1 = 0.016) (ρ = 0.413) q = 1.988 ω = 2.69 | None | 96 449 486 570 |
Node ARF11 | 5 | 0.151 | 0.00 | 1.74 | ρ0 = 0.932 (ρ1 = 0.068) (ρ = 0.528) q = 2.885 ω = 1.00 | None | 6 334 370 372 376 383 399 412 413 478 529 |
Node ARF12 | 6 | 0.566 | 19.42** | 19.4** | ρ0 = 0.982 (ρ1 = 0.018) (ρ = 0.056) q = 0.054 ω = 10.50 | 175 335 389 433 444 447 527 567 569 570 572 | 175 335 351 359 389 433 444 447 527 567 569 570 572 |