| Â | dN/dS1 |
P
MK
2
|
P
PAML
3
| nM4 | nM (A-B)5 | nTS6 | nTS (A-B)7 |
|---|
mcyD
| 0.2270 | > 0.50 | > 0.50 | 0 | 0 | 24 | 1 |
mcyG
| 0.2437 | > 0.50 | < 0.001 | 2 (M2a) | 2 | 15 | 7 |
mcyJ
| 0.1696 | > 0.50 | < 0.001 | 2 (M8) | 1 | 10 | 1 |
- 1Ratio of nonsynonymous substitutions per nonsynonymous sites to synonymous substitutions per synonymous sites based on M0 model of PAML.
- 2P-value of the McDonald-Kreitman test (group A vs. B) [33].
- 3P-values of likelihood ratio tests for both M1a vs. M2a, and M7 vs. M8 in PAML [34]. Significant value indicates the presence of positively selected sites.
- 4 Number of codons under positive selection detected by the model showing the highest likelihood (indicated in parentheses) of PAML (P < 0.05).
- 5 Number of codons under positive selection changed on the branch of the group A-B boundary according to PAML using the model described in nM column.
- 6 Number of codons under positive selection according to TreeSAAP [35].
- 7 Number of codons under positive selection changed on the branch of the group A-B boundary according to TreeSAAP.
