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Table 1 Individual Delta values (iDV) of the plant individuals.

From: General functions to transform associate data to host data, and their use in phylogenetic inference from sequences with intra-individual variability

  PBC FRQ MIN MOD Evolutionary interpretation
Acer section Acer, median iDV 0.217 0.200 0.215 0.214  
Individual gd 1, group B4, A. saccharum 0.279 0.268 0.255 0.299 Early isolated lineage; maximal iDV (gd with a strong plesiomorphic signal)
Population ni A, group B4, A. saccharum 0.315 0.305 0.328 0.319  
Individual us11, group B2, A. cf. monspessulanum 0.294 0.310 0.283 0.300 Ancestral within group B2
Individual ib 1, group B2, A. ibericum 0.230 0.198 0.224 0.256 2nd highest iDV in group B2
Individual ms17, group B2, A. monspessulanum 0.188 0.182 0.161 0.168 Minimal iDV, highly diagnostic ITS sequences
Individual xx 5, group B2, A. monspessulanum 0.230 0.198 0.260 0.169 Includes two chimeric clones (B2 × B3)
Fagus, median iDV 0.276 0.255 0.248 0.248  
Individual lo47, subgenus Fagus: F. longipetiolata 0.379 0.352 0.335 0.337 Maximal iDV, reflecting an ancient ITS polymorphism
Individual lo 2, subgenus Fagus: F. longipetiolata 0.279 0.250 0.272 0.256 Lowest iDV in F. hayatae-longipetiolata
Individual ja25, subgenus Engleriana: F. japonica 0.224 0.194 0.215 0.193 Minimal iDV; all ITS variants of subgenus Engleriana are clearly distinct from ot her Fagus spp.
Zelkova, median iDV 0.172 0.142 0.246 0.228  
Individual cp 2, Z. carpinifolia 0.237 0.182 0.246 0.265 Ancestral within genus; highest iDV
Individual se 2, Z. cf. serrata (hybrid) 0.160 0.136 0.252 0.300 Genetic hybrid of Z. serrata and Z. schneideriana
   Individual se 5, Z. serrata 0.167 0.142 0.266 0.228  
   Individual sd 1, Z. schneideriana 0.178 0.155 0.240 0.203  
Individual sd 3, Z. schneideriana 0.144 0.112 0.201 0.219 Minimal iDV, only species-diagnostic ITS variants
  1. Plant specimens' iDV inferred from distances matrices obtained with four different transformation methods are compared; gaps were treated as missing data and a minimum number of three associates per host was applied. Affiliation to plant species as well as an evolutionary interpretation of particularly high iDV (i.e. low treelikeness) observed is indicated.