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Table 1 Candidate transcripts upregulated in X. laevis compared to hybrids.

From: Gene expression analysis of the ovary of hybrid females of Xenopus laevis and X. muelleri

ProbeID

GenBankID

Target Gene

Gene Symbol

Description/Molecular Function

Mean Laevis

SD Laevis

Mean Hybrid

SD Hybrid

L-H

adj.P.Val

Xl.1473.1.A1_at

AW147858

EST

 

Weakly similar to hypothetical protein MGC3731 (H. sapiens)

10.18

0.56

4.28

0.43

5.90

0.0041

Xl.7484.1.A1_at

BJ081331

EST

MGC84382

Intracellular signaling cascade

7.33

0.54

3.01

0.25

4.32

0.0041

Xl.14874.1.A1_at

BM180490

EST

 

Highly similar to T2D1_HUMAN TRANSCRIPTION INITIATION FACTOR TFIID 250 KD SUBUNIT

7.35

0.35

3.29

0.54

4.06

0.0041

Xl.2557.1.S1_at

BG730898

EST

 

Weakly similar to A39599 55 K erythrocyte membrane protein – human (H. sapiens)

10.12

0.30

6.10

0.18

4.02

0.0041

Xl.4581.1.A1_at

CB562594

EST

LOC398314

Dihydrolipoamide acetyltransferase

7.34

0.40

3.45

0.37

3.88

0.0041

Xl.14122.1.A1_at

BJ079520

EST

LOC494727

 

9.51

0.42

5.70

1.02

3.81

0.0072

Xl.12012.2.A1_at

BM191810

EST

 

Weakly similar to FW1A_HUMAN F-boxWD-repeat protein

7.39

0.34

3.63

0.77

3.76

0.0057

Xl.23885.1.S1_at

BQ388097

EST

  

7.76

0.50

4.05

0.59

3.71

0.0057

Xl.3628.1.A1_at

BG023013

EST

  

7.18

1.34

3.52

0.77

3.66

0.0325

Xl.24509.1.A1_at

BJ078115

EST

MGC132176

Heme oxygenase (decyclizing) activity

9.04

0.30

5.50

0.56

3.53

0.0041

Xl.14330.2.S1_at

BG021901

EST

MGC85135

Nucleic acid binding

8.63

0.27

5.34

0.36

3.29

0.0041

Xl.10705.1.A1_at

BJ051966

EST

LOC495457

Weakly similar to A36368 transcription factor CBF, CCAAT-binding – (H. sapiens)

8.67

0.34

5.45

0.79

3.22

0.0064

Xl.1973.1.S1_at

BQ383513

EST

MGC78898

Ubiquitin-protein ligase activity

7.41

0.19

4.19

0.39

3.22

0.0041

Xl.4825.1.A1_at

BG514303

EST

  

10.16

0.84

6.99

0.62

3.17

0.0182

Xl.14885.1.A1_at

BM180520

EST

MGC82215

 

8.79

0.46

5.64

0.23

3.15

0.0057

Xl.16512.1.A1_at

BJ050593

EST

  

7.03

0.48

3.91

1.11

3.12

0.0142

Xl.1448.2.S1_a_at

BG408234

EST

 

Moderately similar to pallidin; pallid (mouse) homolog, pallidin (H. sapiens)

7.59

0.44

4.50

1.91

3.10

0.0325

Xl.16106.1.A1_at

BG161783

EST

LOC495116

 

8.24

0.23

5.18

0.69

3.05

0.0057

Xl.25509.1.A1_at

BJ084136

EST

LOC495259

 

6.09

0.34

3.09

0.23

3.00

0.0044

Xl.25610.1.A1_at

BF025269

EST

 

Similar to thyroid hormone receptor associated protein 3 (predicted) [Rattus norvegicus]

7.16

0.09

4.19

0.77

2.98

0.0057

Xl.10826.1.A1_at

CB560349

EST

MGC82938

Moderately similar to AAKG_HUMAN 5-AMP-activated protein kinase, (H. sapiens)

8.37

0.31

5.42

0.37

2.95

0.0047

Xl.8907.1.S1_at

AW632884

proliferation-2G4

Pa2g4

Xenopus laevis, Similar to proliferation-associated 2G4

6.95

0.49

4.00

1.03

2.95

0.0148

Xl.6727.1.A1_at

BG234472

EST

LOC780754

Regulation of transcription, DNA-dependent

7.28

0.75

4.33

0.33

2.95

0.0149

Xl.2780.1.S1_at

BQ400343

TIA1

tial1-a

Nucleic acid binding

6.41

0.58

3.52

0.64

2.89

0.0124

Xl.16426.1.A1_at

BJ045456

EST

  

6.58

0.40

3.71

0.46

2.87

0.0063

Xl.6421.1.A1_at

AW633197

EST

MGC68457

 

8.68

0.38

5.82

0.21

2.86

0.0057

Xl.22941.1.A1_at

BJ048949

EST

MGC83726

Moderately similar to A57088 nucleoporin-like protein Rab;regulation of GTPase activity

6.79

0.15

3.98

0.43

2.81

0.0041

Xl.25368.2.A1_at

BI444111

EST

MGC69123

Weakly similar to IFR1_HUMAN INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1(H. sapiens)

6.21

0.61

3.42

0.56

2.79

0.0139

Xl.14796.1.A1_at

BM179493

EST

MGC82526

 

7.10

0.69

4.32

0.68

2.78

0.0182

Xl.19146.3.A1_at

BJ057192

EST

MGC81986

 

7.88

0.52

5.11

0.90

2.78

0.0151

  1. Top 30 candidate transcripts upregulated in X. laevis and differentially expressed between females of X. laevis and hybrids. Expression values are in log2 scale; SD = standard deviation of expression values. P values are adjusted according to FDR moderated t-tests.