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Table 3 Phylogeny inference performed on a mtDNA dataset. 100 times MAP phylogeny inference on step by step larger proportions of the tree shown in Figure 5.

From: Birth-death prior on phylogeny and speed dating

 

Known1

Inferred2

Success3

>Tree

>tree

>best

>median

>worst

%

a

-8843.8

-8816.8

-8829.0

-8953.7

72

a + b

-13381.9

-13345.0

-13369.6

-13472.5

65

a + b + c

-22054.2

-21977.7

-22025.0

-22339.3

73

a + b + c + d

-30327.7

-30235.7

-30315.5

-30658.7

58

  1. 1Reference log-likelihood value obtained with the tree topology in Figure 5.
  2. 2Log-likelihood value obtained starting from a random tree topology.
  3. 3Percentage of runs finding a tree with likelihood at least as good as for the tree topology in Figure 5.