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Table 3 Haplotypes with longer than expected homozygosity (EHH test) for DCT and TYRP1.

From: Complex signatures of selection for the melanogenic loci TYR, TYRP1 and DCT in humans

Locus

Core

SNPs IDs

Chr positiona

Core haplotype

frequencyc

popd

    

CEU

ASI

YRI

 

DCT

rs9516418

Chr13:93909510

TCA

5%

18%

0%

ASI

 

rs9584234

Chr13:93909660

(101)b

    
 

rs12877248

Chr13:9390983

     

TYRP1

rs10809814

Chr9:12649098

AA

5%

71%

19%

ASI

 

rs4741242

Chr9:12649691

(10)b

    

TYRP1

rs10960751

Chr9:12665264

TGA

0%

0%

20%

YRI

 

rs10960752

Chr9:12665284

(001)b

    
 

rs932761

Chr9:12665380

     
  1. a Coordinates from HapMap Data Rel. 21a/PhaseII, Jan07 on NCBI B35 assembly, dbSNP b125.
  2. b Between brackets, ancestral/derived coding of haplotypes; 0: ancestral, 1: derived
  3. c CEU: HapMap North European Caucasians; ASI: HapMap Chinese+Japanese; YRI: HapMap Yorubas.
  4. d Population in which the core haplotype shows longer than expected EHH at a significance value of 0.05 (see Methods).