Skip to main content

Table 2 HapMap genotyped SNPs showing significant FSTa

From: Complex signatures of selection for the melanogenic loci TYR, TYRP1 and DCT in humans

Locus

SNP ID

Positionb

Gene region

FSTCEU vs ASIc

TYRP1

rs13293905

Chr9:12675943

5' flanking region

0.679

 

rs10756393

Chr9:12682252

5' flanking region

0.558

 

rs2762462

Chr9:12689776

intron

0.638

 

rs2762463

Chr9:12691897

intron

0.671

 

rs2733832

Chr9:12694725

intron

0.581

 

rs2733833

Chr9:12695095

intron

0.661

 

rs2075509

Chr9:12695219

intron

0.553

 

rs2209277

Chr9:12696236

intron

0.671

 

rs683

Chr9:12699305

3' UTR

0.644

 

rs2762464

Chr9:12699586

3' UTR

0.652

 

rs910

Chr9:12700035

3' UTR

0.671

 

rs1063380

Chr9:12700090

3' UTR

0.671

 

rs2733835

Chr9:12702157

3' flanking region

0.581

 

rs12379024

Chr9:12707405

3' flanking region

0.599

 

rs10491744

Chr9:12710106

3' flanking region

0.599

DCT

rs1325611

Chr13:93892386

intron

0.607

 

rs1407995

Chr13:93894014

intron

0.594

 

rs2031526

Chr13:93898842

intron

0.607

 

rs3782972

Chr13:93901047

intron

0.641

 

rs6492706

Chr13:93937385

5' flanking region

0.468

  1. a Multiple-test corrected significant FST values at an FDR of 5% (see Material and Methods). A total of 97 SNPs were analyzed.
  2. b Coordinates from HapMap Data Rel. 21a/PhaseII, Jan07 on NCBI B35 assembly, dbSNP b125.
  3. c only CEU vs. ASI show multiple-test corrected significant FST values. CEU: HapMap North European Caucasians; ASI: HapMap Chinese plus Japanese.