Table 1 Markers utilized in this study, their positions in the Rattus and Mus genomes, and their source.
Marker | Rattus Chr. | Rattus Mb | Mus Chr. | Mus Mb | Marker Source |
|---|---|---|---|---|---|
Plagl1 | 1 | 7.9 | 10 | 12.8 | This study |
Clptml1 | 1 | 30.5 | 13 | 74.1 | PM_BWp0019B05 |
Mas1 | 1 | 42.1 | 17 | 11.7 | [36] |
Pacrg | 1 | 44.4 | 17 | 10.3 | PM_BWt0020A08 |
Tcp10b | 1 | 47.6 | 17 | 6.8 | [32] |
Usp29 | 1 | 65.4 | 7 | 5.9 | This study |
Zfp574 | 1 | 80.5 | 7 | 20.3 | PM_BWt0030D07 |
Hnrpl | 1 | 84.0 | 7 | 24.2 | PM_BWt0015D0f |
Q8C5Y2 | 1 | 91.8 | 7 | 43.2 | PM_BWt0034E03 |
Myod1 | 1 | 96.9 | 7 | 46.3 | This study |
Ube3a | 1 | 110.8 | 7 | 59.1 | PM_BWt0035G08 |
Rab6ip1 | 1 | 167.6 | 7 | 109.7 | PM_BWt0031E09 |
H19 | 1 | 202.8 | 7 | 137.0 | [35] |
Prdx5 | 1 | 209.7 | 19 | 7.0 | PM_BWt0010H02 |
Prpf19 | 1 | 213.6 | 19 | 11.0 | PM_BWt0050D11 |
Xpnpep1 | 1 | 259.4 | 19 | 53.1 | PM_BWt0029G03 |
Spz1 | 2 | 22.8 | 13 | 93.7 | PM_BWt0006E03 |
Car1 | 2 | 88.1 | 3 | 14.7 | PM_BWt0033B03 |
Tloc1 | 2 | 116.3 | 3 | 30.1 | Contig [t0041H10] |
Golph4 | 2 | 166.7 | 3 | 75.1 | PM_BWt0011G08 |
Atp1a1 | 2 | 196.6 | 3 | 101.0 | PM_BWp0001H12 |
Unc5c | 2 | 239.4 | 3 | 140.4 | PM_BWt0025F04 |
Fbxw5 | 3 | 3.7 | 2 | 25.4 | Contig PM_BWt0016A08U |
Clp1 | 3 | 67.9 | 2 | 84.5 | PM_BWt0033G11 |
Chst1 | 3 | 77.7 | 2 | 92.4 | PM_BWp0021H02 |
Apip | 3 | 88.3 | 2 | 102.9 | PM_BWt0003D08 |
Thbs1 | 3 | 103.9 | 2 | 117.8 | PM_BWp0019F04 |
Adra1d | 3 | 119.2 | 2 | 131.1 | [32] |
Dpm1 | 3 | 159.4 | 2 | 167.9 | PM_BWt0028C07 |
Srpk2 | 4 | 6.9 | 5 | 23.0 | Contig PM_BWt0030E08U |
Sri | 4 | 21.6 (Celera) | 5 | 8.1 | PM_BWt0020G07 |
Ccdc132 | 4 | 28.3 | 6 | 3.5 | PM_BWt0038C06 |
1700016G05Rik | 4 | 68.4 | 6 | 40.4 | Contig [t0039B08] |
Gabarapl1 | 4 | 167.0 | 6 | 129.5 | PM_BWt0019H08 |
Tram1 | 5 | 4.8 | 1 | 13.7 | PM_BWt0037H08 |
Oprk1 | 5 | 14.0 | 1 | 5.6 | This study |
Ube2j1 | 5 | 49.3 | 4 | 33.3 | PM_BWp0021E08 |
Rnf20 | 5 | 66.4 | 4 | 49.5 | PM_BWt0013E09 |
Ubxd5 | 5 | 152.9 | 4 | 133.4 | PM_BWt0007G04 |
Spata21 | 5 | 160.0 | 4 | 140.0 | PM_BWt0027G03 |
Mmel1 | 5 | 171.7 | 4 | 153.7 | PM_BWt0028B02 |
Sos1 | 6 | 3.3 | 17 | 78.2 | [40] |
Ppp1cb | 6 | 24.1 | 5 | 32.7 | PM_BWp0006A12 |
Preb | 6 | 25.4 | 5 | 31.2 | PM_BWt0037F10 |
Dnmt3a | 6 | 26.8 | 12 | 3.8 | This study |
Allc | 6 | 46.4 | 12 | 29.1 | PM_BWt0049G04 |
4930504H06Rik | 6 | 51.7 | 12 | 34.0 | PM_BWt0033A03 |
Clec14a | 6 | 78.9 | 12 | 59.2 | PM_BWp0007A11 |
Pygl | 6 | 92.3 | 12 | 71.1 | PM_BWp0007B06 |
Pcnx | 6 | 105.7 | 12 | 82.8 | Contig [t0010D02] |
1700001K19Rik | 6 | 135.3 | 12 | 111.1 | Contig [t0029G05] |
Il23a | 7 | 1.6 | 10 | 128.0 | [34] |
Stk11 | 7 | 11.1 | 10 | 79.5 | PM_BWp0005E08 |
Hsp90b1 | 7 | 23.4 | 10 | 86.1 | PM_BWp0013F08 |
Phkd1l1 | 7 | 80.3 | 15 | 44.3 | Contig [T0025f09] |
C920006C10Rik | 7 | 103.2 | 15 | 65.6 | PM_BWt0015A02 |
Adck5 | 7 | 114.7 | 15 | 76.4 | PM_BWt0028A12 |
Mut | 9 | 15.8 | 17 | 40.4 | Contig [t0024G12] |
Col9a1 | 9 | 22.9 | 1 | 24.4 | [31] |
Col3a1 | 9 | 44.3 | 1 | 45.6 | [31] |
Fn1 | 9 | 70.9 | 1 | 71.9 | [32] |
Lama1 | 9 | 107.1 | 17 | 65.5 | [32] |
Btbd12 | 10 | 11.8 | 16 | 3.7 | PM_BWt0019F01 |
Gbl | 10 | 13.7 | 17 | 22.3 | PM_BWp0005A03 |
Hba | 10 | 15.6 | 11 | 32.2 | [31] |
Canx | 10 | 35.9 | 11 | 49.9 | PM_BWp0001C07f |
Sparc | 10 | 40.9 | 11 | 55.0 | [32] |
Trp53 | 10 | 56.4 | 11 | 69.2 | M. McLachlan (pers. comm.) |
Mpo | 10 | 76.1 | 11 | 87.4 | [32] |
HoxB | 10 | 85.1 | 11 | 96.0 | [32] |
Gast | 10 | 89.3 | 11 | 100.0 | [33] |
Myl4 | 10 | 93.7 | 11 | 104.4 | [32] |
Scn4a | 10 | 95.8 | 11 | 106.1 | [31] |
Sstr2 | 10 | 96.2 | 11 | 113.3 | [33] |
P4hb | 10 | 110.0 | 11 | 120.2 | [32] |
Arvcf | 11 | 846.0 | 16 | 18.3 | PM_BWp0007D05 |
Flt1 | 12 | 7.9 | 5 | 146.5 | PM_BWp0007C04 |
Lrch4 | 12 | 19.7 | 5 | 136.6 | Contig PM_BWt0042B01 |
Piwil1 | 12 | 28.9 | 5 | 127.9 | Contig PM_BWt0011G03 |
Mapkapk5 | 12 | 36.1 | 5 | 121.8 | PM_BWt0019E09 |
Bcl2 | 13 | 12.7 | 1 | 106.5 | [32] |
Glul | 13 | 65.9 | 1 | 155.7 | [33] |
Acbd3 | 13 | 96.7 | 1 | 180.7 | PM_BWP0009B01 |
Afp | 14 | 19.1 | 5 | 89.8 | PM_BWp0002H11 |
Pcdcl2 | 14 | 34.2 | 5 | 75.6 | PM_BWt0012A04 |
Hip2 | 14 | 45.4 | 5 | 64.3 | PM_BWt0028D02 |
Xbp1 | 14 | 86.2 | 11 | 5.4 | PM_BWp0012A03 |
Igfbp1 | 14 | 88.0 | 11 | 7.1 | [32] |
Grb10 | 14 | 92.8 | 11 | 11.8 | [17] |
Ugp2 | 14 | 102.1 | 11 | 21.2 | PM_BWp0009C07 |
Ecd | 15 | 4.2 | 14 | 19.1 | PM_BWt0026E07 |
Cma1 | 15 | 34.1 | 14 | 50.5 | [31] |
Itm2b | 15 | 54.0 | 14 | 72.1 | PM_BWp0020C01 |
9130404D08Rik | 16 | 19.9 | 8 | 72.9 | PM_BWt0040G05 |
Spata4 | 16 | 35.3 | 8 | 56.1 | contig [t0034B10] |
Mtus1 | 16 | 54.6 | 8 | 39.9 | contig [too42G11] |
Adam3 | 16 | 71.7 | 8 | 23.4 | contig [t0035F12] |
Sec61a2 | 17 | 83.5 | 2 | 5.8 | PM_BWt0014H11U |
5430411K18Rik | 18 | 74.9 | 18 | 78.1 | PM_BWt0031G08 |
Hps4 | 19 | 14.4 | 5 | 112.6 | PM_BWp0006B12 |
Phkb | 19 | 22.3 | 8 | 85.1 | PM_BWt0031G11 |
Elmod2 | 19 | 26.2 | 8 | 82.6 | PM_BWt0036H11 |