Table 5 Samples analysed in this study and corresponding nuclear gene genotypes. For the geographical origin of samples, see figure 1. Alleles correspond to those in figure 2. * indicates ND4 sequence previously published.
Species/MtDNA lineage | Sample Code | Locality | Country | Genotype | |
|---|---|---|---|---|---|
|  |  |  |  | 6-Pgdint7 | β-fibint7 |
P. bocagei | Mad11* | Madalena | Portugal | PR1–PR2 | BR1–BR2 |
|  | Vair12* | Vairão | Portugal | PR2-PR2 | BR1–BR3 |
|  | Cor6* | Coruña | Spain | PR1-PR1 | BR1-BR1 |
|  | M6* | Montesinho | Portugal | PR1-PR1 | BR1–BR4 |
|  | BTA5* | Tanes | Spain | PR1–PR2 | BR1-BR1 |
P. carbonelli | MC3* | Monte Clérigo | Portugal | PR3-PR3 | BR5-BR5 |
|  | PR3* | Playa del Rompeculos | Spain | PR5-PR5 | BR5–BR8 |
|  | A11* | Aveiro | Portugal | PR3–PR7 | BR6–BR9 |
| Â | SPM2* | S. Pedro de Moel | Portugal | PR6-PR6 | BR7-BR7 |
|  | LA7* | La Alberca | Spain | PR3–PR4 | BR10–BR11 |
P. vaucheri | LB2* | La Barrosa | Spain | PR37–PR40 | - |
|  | LB4* | La Barrosa | Spain | PR38–PR39 | BR45–BR47 |
|  | LB5* | La Barrosa | Spain | - | BR46–BR47 |
|  | LB7* | La Barrosa | Spain | PR37–PR38 | - |
|  | BT6* | Bab Taza | Morocco | PR41–PR42 | BR25-BR25 |
|  | Mis3* | Mischliffen | Morocco | PR41–PR42 | BR48–BR49 |
|  | Ouk7* | Oukaimeden | Morocco | PR41–PR43 | BR49-BR49 |
P. hispanica type 1A | Mon1 | Montesinho | Portugal | PR9-PR9 | BR12–BR25 |
|  | Mon2 | Montesinho | Portugal | PR8–PR10 | BR13–BR24 |
|  | Anc2 | Los Ancares | Spain | PR8-PR8 | BR15–BR18 |
|  | FT12 | Tua | Portugal | - | BR21–BR23 |
| Â | PG2 | Atlantic Islands | Spain | PR1-PR1 | BR18-BR18 |
|  | Pen2 | Pendilhe | Portugal | PR11–PR12 | BR17–BR26 |
|  | Pen8 | Pendilhe | Portugal | PR1–PR8 | BR14–BR25 |
|  | Rua1* | Vila de Rua | Portugal | - | BR18–BR22 |
P. hispanica type 1B | Trj1* | Trujillo | Spain | PR20–PR22 | BR27–BR30 |
|  | Oro1* | Oropesa | Spain | PR21-PR21 | BR29–BR31 |
| Â | Vil3 | Villacastin | Spain | - | BR20-BR20 |
|  | Vil8 | Villacastin | Spain | PR17–PR20 | BR19–BR20 |
|  | GuaI1 | Guadarrama | Spain | PR18–PR19 | BR20-BR20 |
|  | HLA1 | La Alberca | Spain | PR13–PR14 | BR16–BR28 |
P. hispanica type 2 | CV1 | Castelo de Vide | Portugal | PR23–PR24 | BR32–BR33 |
|  | SM1 | S. Mamede | Portugal | PR24–PR25 | BR34-BR34 |
|  | Ev4 | Évora | Portugal | PR27–PR29 | BR35-BR35 |
|  | Mad1 | Madrid | Spain | PR26–PR28 | - |
| Â | Mad2* | Madrid | Spain | PR15-PR15 | BR36-BR36 |
|  | And9 | Saucedilla | Spain | - | BR38–BR39 |
|  | And10* | Benatae | Spain | PR26–PR27 | - |
|  | CR1 | Castaño de Robledo | Spain | PR16–PR30 | BR37-BR37 |
P. hispanica sensu stricto | Cue2 | Cuenca | Spain | - | BR43–BR44 |
|  | Mot1* | Motilla del Palancar | Spain | PR31–PR33 | - |
|  | Pod12* | Granada | Spain | PR3–PR34 | BR41-BR41 |
|  | And8* | Puebla de D. Fadrique | Spain | PR32–PR34 | BR40–BR43 |
|  | SN2 | Sierra Nevada | Spain | PR33–PR34 | BR25–BR42 |
| Â | SN10 | Sierra Nevada | Spain | PR35-PR35 | BR25-BR25 |
|  | SN11 | Sierra Nevada | Spain | PR36-PR36 | BR25–BR42 |
|  | BEV7337 | Sta. Maria de Nieva | Spain | PR56–PR58 | BR62–BR66 |
P. hispanica type 3 | Barc5 | Barcelona | Spain | PR33–PR50 | BR56–BR57 |
| Â | Bur2* | Burgos | Spain | PR33-PR33 | BR25-BR25 |
| Â | Get1 | Getaria | Spain | PR52-PR52 | BR70-BR70 |
|  | Med1* | Medinaceli | Spain | PR3–PR51 | BR58–BR59 |
|  | Pht1 | Tarragona | Spain | PR53–PR54 | BR60-BR60 |
P. hispanica Galera | Gal1x | Galera | Spain | PR55–PR57 | BR64–BR65 |
| Â | Gal1 | Galera | Spain | - | BR63-BR63 |
| Â | Gal3* | Galera | Spain | PR55-PR55 | - |
|  | Gal3x | Galera | Spain | PR55–PR56 | BR67-BR67 |
|  | Gal5x | Galera | Spain | - | BR65–BR67 |
|  | BEV7353 | Puebla de D. Fadrique | Spain | PR55–PR56 | BR68–BR69 |
| Â | Gal2 | Galera | Spain | PR55-PR55 | - |
|  | Gal7x | Galera | Spain | PR55-PR55 | BR61–BR67 |
P. hispanica Jebel Sirwah | JS1* | Jebel Sirwah | Morocco | PR44–PR46 | BR50–BR51 |
|  | JS2 | Jebel Sirwah | Morocco | PR45–PR46 | BR51-BR51 |
|  | JS3 | Jebel Sirwah | Morocco | PR45–PR46 | BR51-BR51 |
|  | JS6* | Jebel Sirwah | Morocco | PR44–PR46 | BR51-BR51 |
|  | PH184 | Jebel Sirwah | Morocco | PR45–PR46 | BR52–BR53 |
| Â | PH186 | Jebel Sirwah | Morocco | PR44-PR44 | BR51-BR51 |
P. hispanica Tunisia | OK1* | Oued Kébir | Tunisia | PR44–PR49 | BR54-BR54 |
|  | OK8 | Oued Kébir | Tunisia | PR44–PR49 | BR55-BR55 |
|  | OK11 | Oued Kébir | Tunisia | PR47–PR48 | BR54-BR54 |
| Â | LK5 | Le Kef | Tunisia | PR49-PR49 | BR55-BR55 |
|  | LK6* | Le Kef | Tunisia | PR44–PR49 | BR55-BR55 |
P. muralis | MTA1* | Tanes | Spain | - | BR71-BR71 |
|  | MTA2 | Tanes | Spain | - | BR71–BR72 |
| Â | MTA3 | Tanes | Spain | PR59-PR59 | BR71-BR71 |
| Â | MTA4 | Tanes | Spain | PR60-PR60 | BR71-BR71 |
| Â | Gua1* | Guadarrama | Spain | PR61-PR61 | - |
| Â | Gua2 | Guadarrama | Spain | PR61-PR61 | BR71-BR71 |
| Â | Gua13 | Guadarrama | Spain | PR61-PR61 | BR71-BR71 |