Non-equilibrium estimates of gene flow inferred from nuclear genealogies suggest that Iberian and North African wall lizards (Podarcis spp.) are an assemblage of incipient species

Pinho, Catarina; Harris, D James; Ferrand, Nuno

doi:10.1186/1471-2148-8-63

Table 3 ML estimates and 90% HPD of population migration rates (2Nm) between species of wall lizards. θ and m parameters used to calculate migration rates were estimated using the IM software. Values higher than 0.1 are highlighted. Species abbreviations are as in table 2.

From: Non-equilibrium estimates of gene flow inferred from nuclear genealogies suggest that Iberian and North African wall lizards (Podarcis spp.) are an assemblage of incipient species

		from
		Pb	Pc	Pv	Ph 1A	Ph 1B	Ph 2	Ph ss	Ph 3	Ph Gal	Ph JS	Ph Tun	Pm
to	Pb	-	0.001	0.001	0.002	0.001	0.001	0.001	0.001	0.001	0.004	0.001	0.001
			0.000 – 1.232⁺	0.000 – 0.800	0.000 – 2.868⁺	0.000 – 1.753⁺	0.000 – 0.887	0.000 – 0.928	0.000 – 1.110	0.000 – 0.646	0.000 – 0.752	0.000 – 0.782	0.000 – 0.354
	Pc	0.037	-	0.005	0.066	0.127	0.006	0.004	0.005	0.005	0.006	0.006	0.006
		0.002 – 2.154		0.002 – 1.593	0.002 – 1.870	0.002 – 1.916	0.002 – 1.503	0.002 – 5.057⁺	0.001 – 7.860⁺	0.003 – 1.883	0.003 – 1.893	0.003 – 1.983	0.003 – 0.617
	Pv	0.016	0.012	-	0.015	0.008	0.011	1.218*	0.402	0.010	0.009	0.009	0.009
		0.006 – 12.359	0.005 – 3.413		0.006 – 12.032	0.001 – 18.631⁺	0.004 – 2.354	0.003 – 9.669	0.004 – 52.568⁺‡	0.004 – 8.074‡	0.004 – 2.748	0.004 – 3.761	0.005 – 1.119
	Ph 1A	7.501*	0.015	0.014	-	0.019	0.018	0.013	0.017	0.013	0.017	0.018	0.011
		0.009 – 51.669‡⁺	0.007 – 2.520	0.002 – 28.035⁺		0.006 – 28.481‡	0.010 – 1.942	0.006 – 10.953	0.009 – 5.504	0.007 – 2.034	0.008 – 16.823‡	0.008 – 15.027	0.006 – 0.853
	Ph 1B	0.012	0.010	0.036	0.009	-	0.012	0.338	0.012	0.009	0.012	0.011	0.009
		0.006 – 25.531‡⁺	0.006 – 2.069	0.004 – 57.672‡⁺	0.003 – 7.664		0.006 – 3.894	0.004 – 20.194	0.005 – 7.917	0.005 – 2.436	0.005 – 5.222	0.005 – 5.445	0.005 – 0.876
	Ph 2	0.018	0.019	0.018	0.017	0.016	-	0.017	0.017	0.018	0.018	0.017	0.015
		0.010 – 2.931	0.011 – 1.835	0.010 – 4.859	0.010 – 1.795	0.008 – 5.134		0.009 – 3.345	0.009 – 2.222	0.010 – 2.154	0.009 – 2.196	0.009 – 2.376	0.009 – 0.958
	Ph ss	0.005	0.054	0.005	0.004	0.005	0.005	-	0.003	1.212*	0.006	0.005	0.005
		0.002 – 2.065	0.002 – 5.791	0.002 – 2.362	0.002 – 1.448	0.002 – 6.000⁺	0.002 – 0.814		0.001 – 10.353⁺	0.129 – 6.020	0.003 – 2.067	0.002 – 1.719	0.003 – 0.501
	Ph 3	0.012	0.012	0.007	0.008	0.011	0.010	0.015	-	0.013	0.009	0.009	0.157
		0.005 – 13.516‡	0.005 – 20.759‡	0.001 – 13.320	0.003 – 2.515	0.004 – 9.743	0.005 – 1.568	0.005 – 69.944‡⁺		0.005 – 10.353‡	0.004 – 6.933‡	0.004 – 9.892	0.004 – 2.130
	Ph Gal	0.002	0.002	0.002	0.002	0.002	0.000	0.002	0.002	-	0.002	0.002	0.002
		0.001 – 0.665	0.001 – 0.722	0.001 – 0.819	0.001 – 0.653	0.001 – 0.544	0.000 – 0.119	0.001 – 0.640	0.001 – 0.640		0.001 – 0.708	0.001 – 0.740	0.001 – 0.391
	Ph JS	0.001	0.001	0.001	0.000	0.001	0.001	0.001	0.001	0.001	-	0.105	0.001
		0.000 – 0.733	0.000 – 1.507	0.000 – 1.167	0.000 – 2.321⁺	0.000 – 1.431	0.000 – 0.727	0.000 – 0.899	0.000 – 1.171⁺	0.000 – 0.732		0.000 – 1.585⁺	0.000 – 0.277
	Ph Tun	0.003	0.001	0.001	0.001	0.001	0.001	0.001	0.001	0.001	0.002	-	0.001
		0.000 – 0.721	0.000 – 1.126	0.000 – 0.914	0.000 – 1.762⁺	0.000 – 0.864	0.000 – 0.712	0.000 – 0.900	0.000 – 0.995	0.000 – 0.752	0.000 – 1.149		0.000 – 0.305
	Pm	0.003	0.012	0.013	0.013	0.010	0.001	0.016	0.002	0.007	0.003	0.000	-
		0.000 – 0.267	0.000 – 0.347	0.000 – 0.524	0.000 – 0.468	0.000 – 0.454	0.000 – 0.445	0.000 – 0.354	0.000 – 0.676	0.000 – 0.264	0.000 – 0.219	0.000 – 0.228

*: migration rate significantly different from 0 (P < 0.05).
‡, ⁺: the actual interval could not be reliably estimated because the likelihood surfaces for θ (‡) or m (⁺) were relatively flat.

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