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Table 4 Presence/absence analysis of retroposon insertions.

From: Phylogenetic position of the langur genera Semnopithecus and Trachypithecus among Asian colobines, and genus affiliations of their species groups

Locus

Primer (5'-3')

Presence

Absence

Asia1

AAGAATCCCAGGGAAGAACACT TTGCTGGCAAAGTGACTCCT

SENT, TOBS, PMEL, PNEM, NLAR

CGUE

Asia2

CCTGCCACTTCTGTCCATCT AGAACAAACACCAAGACAACAGC

SENT, TOBS, PMEL, PNEM, NLAR

CGUE

Asia3

GCTTTGCCACATAAAGAGCTG GGTTAGGTGCAAATGGGAAAC

SENT, TOBS, PMEL, PNEM, NLAR

CGUE

Asia4

TCAATCTTCCAGGGAAAATAAAG GAATATTAGTTGAAATATTTAGGC

SENT, TOBS, PMEL, PNEM, NLAR

CGUE

Asia5

GACCATGGTAAGACAAATGTG GACTCAGGCTTAATTTTAAGTC

SENT, TOBS, PMEL, PNEM, NLAR

CGUE

Asia6

CACCAAGCACAACTGTGAGG, TCTGCCATAGCCATCAGTCA

TOBS, PMEL, PNEM, NLAR

CGUE

Asia7

CTCTTGGTTGGGGTGAAGC GATGGTTGAACAGTGAGACTTGA

SENT, TOBS, PMEL, PNEM, NLAR

CGUE

ST1

TGATTAAAGTCAGATGAACACC GTGTAATGGGATGAAGAACAC

SENT, TVET, TDEL, TOBS, TAUR

PMEL, PNEM, NLAR

ST2

ATACATAGCATTGACTTAACTCT GATCCTGAGCCCACTATTCT

SENT, TOBS

PMEL, PNEM, NLAR

ST3

ACATCAGTGACATCAAATAAGG GAGGAAAAGATACTTTCTCATG

SENT, TOBS

PMEL, PNEM, NLAR

ST4

GGATTGAGAGCAATTTTAAAAGGA GTTCACTCCCAAATCATACTTC

SENT, TOBS

PMEL, PNEM, NLAR, CGUE

ST5

TGTAGCCAGGGAAGCCTCT TGGGATTTCTAATACTATGCCTTTG

SENT, TOBS

PMEL, PNEM, NLAR, CGUE

odd1

AGAAAGTCCCTCCCCAACAC AAGTTGGCAAAGTGGATTGC

PNEM, NLAR, RAVU

SENT, TOBS, PMEL, CGUE

T1

GAAGATTAATACTAGAAGAATCC TTGAACTTTGATCCATGGTGC

TDEL, TOBS, TAUR

TPIL, SENT, TVET, PMEL, PNEM

S1

CAAATTGTGGCTCCTTCAGTTA GGCAATGTACAGCTAACTCTGCT

SENT, TVET, TJOH

TPIL, TDEL, TOBS, TAUR, PMEL, NLAR

S2

CCCATGTGCCTTGGTTTAG GGAAGAAAGTTTGGAATGTGTG

SENT, TVET, TJOH

TPIL, TDEL, TOBS, TAUR, PMEL, NLAR

  1. Abbreviations: CGUE – Colobus guereza, NLAR – Nasalis larvatus, PMEL – Presbytis melalophos, PNEM – Pygathrix nemaeus, RAVU – Rhinopithecus avunculus, SENT – Semnopithecus entellus, TAUR – Trachypithecus auratus, TDEL – T. delacouri, TJOH – T. johnii, TOBS – T. obscurus, TPIL – T. pileatus, TVET – T. vetulus.