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Table 1 A selection of stomatin subfamilies.

From: Slipins: ancient origin, duplication and diversification of the stomatin protein family

Group

Species Representative

Stomatin

Slipin-3* [SLP-3]

Podocin

Slipin-4**

Paraslipin* [SLP-2]

Primates

Homo sapiens

NP_004090.4 (100)

NP660329.1 (100)

NP_055440.1 (100)

-

NP_038470.1 (100)

Rodents

Mus musculus

NP_038543.1 (87)

NP_694796.1 (91)

NP_569723.1 (87)

-

NP_075720.1 (94)

Birds

Gallus gallus

XP_415401.2 (94)

XP_425632.2 (76)

XP_422265.2 (62)

-

XP_430510 (53)

Amphibians

Xenopus tropicalis

-

NP_989344.1 (68)

-

-

NP_001004808.1 (82)

Teleosts

Danio rerio

NP_571833.1 (83)

-

NP_001018155.1 (44)

-

NP_957325.1 (81)

Insects

Drosophila melanogaster

NP_729018.1 (67)

-

-

NP_573357.1 NP_996512.1

NP_611853.2 (65)

Crustaceans

Daphnia pulex

JGI_45422 (71)

-

-

JGIest_193650 JGI_45422

JGIest_204990 (68)

Nematodes

Caenorhabditis elegans

NP_508902.3 (69)

-

-

-

NP_492517.2 (64)

Annelids

Capitella sp. I

JGIest_172850 (71)

-

-

-

JGIest_225245 (64)

Choanoflagellates

Monosiga brevicollis

-

-

-

-

JGIest_ 32235 (62)

Fungi

Schizosaccharomyces pombe

-

-

-

-

NP_596756.1 (53)

 

Debaryomyces hansenii

XP_457231.1 (30) Ω

-

-

-

XP_457451.1 (58)

Plants

Arabidopsis thaliana

-

-

-

-

NP_200221.1 (55)

 

Oryza sativa

-

-

-

-

NP_001061036.1 (48)

Stramenopiles

Phytophthora ramorum

-

-

-

-

JGI_71814 (57)

Kinetoplastids

Trypanosoma cruzi

-

-

-

-

XP_808902.1 (47)

Apicomplexa

Plasmodium falciparum

-

-

-

-

NP_473293.1 (48)

Ciliates

Tetrahymena thermophila

XP_001033024.1 (35) Ω

   

XP_001027964.1 (44)

Diplomonads

Giardia lamblia

-

-

-

-

-

Entamoeba

Entamoeba histolytica

-

-

-

-

-

Archaea (Crenarchaeota)

Aeropyrum pernix

NP_148418.2 (52) ‡

-

-

-

-

Archaea (Euryarchaeota)

Pyrococcus abyssi

NP_126340.1 (49) ‡

-

-

-

NP_127238.1 (42)

Bacteria

Burkholderia thailandensis

YP_440000.1 (48) ‡

-

-

-

YP_442572.1 (51)

 

Neisseria meningitidis

-

-

-

-

NP_274245.1 (49)

  1. Accession numbers or JGI protein IDs of the proposed subfamily members are listed in each column. If genomes contained multiple copies of the same protein, the sequence with the highest BLAST score was selected. Numbers in parentheses indicate % amino acid identity to the human protein in the column heading. – indicates that no match was found in that species. * indicates the new subfamily name, [names in square brackets are previously used names], ** indicates a newly reported subfamily, ‡ = eoslipin [p-stomatin], Ω = alloslipin. Note that slipin-1 [SLP-1] proteins are not included but are highly diverged members of the stomatin protein family.
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BMC Ecology and Evolution

ISSN: 2730-7182

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