TY - CHAP AU - Ohno, S. PY - 1970 DA - 1970// BT - Evolution by gene duplication PB - Berlin CY - Springer-Verlag UR - https://doi.org/10.1007/978-3-642-86659-3 DO - 10.1007/978-3-642-86659-3 ID - Ohno1970 ER - TY - JOUR AU - Amores, A. AU - Force, A. AU - Yan, Y. L. AU - Joly, L. AU - Amemiya, C. AU - Fritz, A. AU - Ho, R. K. AU - Langeland, J. AU - Prince, V. AU - Wang, Y. AU - Westerfield, M. AU - Ekker, M. AU - Postlethwait, J. H. PY - 1998 DA - 1998// TI - Zebrafish hox clusters and vertebrate genome evolution. JO - Science VL - 282 UR - https://doi.org/10.1126/science.282.5394.1711 DO - 10.1126/science.282.5394.1711 ID - Amores1998 ER - TY - JOUR AU - Ferris, S. D. AU - Whitt, G. S. PY - 1979 DA - 1979// TI - Evolution of the differential regulation of duplicate genes after polyploidization. JO - J Mol Evol VL - 12 UR - https://doi.org/10.1007/BF01732026 DO - 10.1007/BF01732026 ID - Ferris1979 ER - TY - JOUR AU - Nadeau, J. H. AU - Sankoff, D. PY - 1997 DA - 1997// TI - Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution. JO - Genetics VL - 147 ID - Nadeau1997 ER - TY - JOUR AU - Wendel, J. F. PY - 2000 DA - 2000// TI - Genome evolution in polyploids JO - Plant Molecular Biology VL - 42 UR - https://doi.org/10.1023/A:1006392424384 DO - 10.1023/A:1006392424384 ID - Wendel2000 ER - TY - JOUR AU - Lynch, M. AU - Conery, J. S. PY - 2000 DA - 2000// TI - The evolutionary fate and consequences of duplicate genes JO - Science VL - 290 UR - https://doi.org/10.1126/science.290.5494.1151 DO - 10.1126/science.290.5494.1151 ID - Lynch2000 ER - TY - JOUR AU - Papp, B. AU - Pál, C. AU - Hurst, L. D. PY - 2003 DA - 2003// TI - Dosage sensitivity and the evolution of gene families in yeast JO - Nature VL - 424 UR - https://doi.org/10.1038/nature01771 DO - 10.1038/nature01771 ID - Papp2003 ER - TY - JOUR AU - Freeling, M. AU - Thomas, B. C. PY - 2006 DA - 2006// TI - Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.3681406 DO - 10.1101/gr.3681406 ID - Freeling2006 ER - TY - JOUR AU - Veitia, R. A. PY - 2003 DA - 2003// TI - Nonlinear effects in macromolecular assembly and dosage sensitivity JO - Journal of Theoretical Biology VL - 220 UR - https://doi.org/10.1006/jtbi.2003.3105 DO - 10.1006/jtbi.2003.3105 ID - Veitia2003 ER - TY - JOUR AU - Katju, V. AU - Lynch, M. PY - 2003 DA - 2003// TI - The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome. JO - Genetics VL - 165 ID - Katju2003 ER - TY - JOUR AU - Husband, B. C. AU - Schemske, D. W. PY - 2000 DA - 2000// TI - Ecological mechanisms of reproductive isolation between diploid and tetraploid Chamerion angustifolium. JO - Journal of Ecology VL - 88 UR - https://doi.org/10.1046/j.1365-2745.2000.00481.x DO - 10.1046/j.1365-2745.2000.00481.x ID - Husband2000 ER - TY - JOUR AU - Kobel, H. R. AU - Du Pasquier, L. PY - 1986 DA - 1986// TI - Genetics of polyploid Xenopus. JO - Trends Genetics VL - 2 UR - https://doi.org/10.1016/0168-9525(86)90286-6 DO - 10.1016/0168-9525(86)90286-6 ID - Kobel1986 ER - TY - CHAP AU - Kobel, H. R. ED - Tinsley, R. C. ED - Kobel, H. R. PY - 1996 DA - 1996// TI - Allopolyploid speciation BT - The Biology of Xenopus PB - Oxford CY - Clarendon Press ID - Kobel1996 ER - TY - JOUR AU - Clark, A. G. PY - 1994 DA - 1994// TI - Invasion and maintenance of a gene duplication. JO - Proc Nat Acad Sci VL - 91 UR - https://doi.org/10.1073/pnas.91.8.2950 DO - 10.1073/pnas.91.8.2950 ID - Clark1994 ER - TY - JOUR AU - Kondrashov, F. A. AU - Rogozin, I. B. AU - Wolf, Y. I. AU - Koonin, E. V. PY - 2002 DA - 2002// TI - Selection in the evolution of gene duplications. JO - Genome Biol VL - 3 UR - https://doi.org/10.1186/gb-2002-3-2-research0008 DO - 10.1186/gb-2002-3-2-research0008 ID - Kondrashov2002 ER - TY - JOUR AU - Larhammer, D. AU - Risinger, C. PY - 1994 DA - 1994// TI - Why so few pseudogenes in tetraploid species? JO - Trends Genet VL - 10 UR - https://doi.org/10.1016/0168-9525(94)90102-3 DO - 10.1016/0168-9525(94)90102-3 ID - Larhammer1994 ER - TY - JOUR AU - Gibson, T. J. AU - Spring, J. PY - 1998 DA - 1998// TI - Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins. JO - Trends Genet VL - 14 UR - https://doi.org/10.1016/S0168-9525(97)01367-X DO - 10.1016/S0168-9525(97)01367-X ID - Gibson1998 ER - TY - JOUR AU - Lynch, M. AU - O'Hely, M. AU - Walsh, B. AU - Force, A. PY - 2001 DA - 2001// TI - The probability of preservation of a newly arisen gene duplicate. JO - Genetics VL - 159 ID - Lynch2001 ER - TY - JOUR AU - Walsh, J. B. PY - 1995 DA - 1995// TI - How often do duplicated genes evolve new functions? JO - Genetics VL - 139 ID - Walsh1995 ER - TY - JOUR AU - Dulai, K. S. AU - von Dornum, M. AU - Mollon, J. D. AU - Hunt, D. M. PY - 1999 DA - 1999// TI - The evolution of trichromatic colour vision by opsin gene duplication in New World and Old World primates. JO - Genome Res VL - 9 ID - Dulai1999 ER - TY - JOUR AU - Piatigorsky, J. AU - Wistow, G. PY - 1991 DA - 1991// TI - The recruitment of crystallins: new functions precede gene duplication. JO - Science VL - 252 UR - https://doi.org/10.1126/science.252.5009.1078 DO - 10.1126/science.252.5009.1078 ID - Piatigorsky1991 ER - TY - JOUR AU - Evans, B. J. PY - 2007 DA - 2007// TI - Ancestry influences the fate of duplicated genes millions of years after duplication in allopolyploid clawed frogs (Xenopus). JO - Genetics VL - 176 UR - https://doi.org/10.1534/genetics.106.069690 DO - 10.1534/genetics.106.069690 ID - Evans2007 ER - TY - JOUR AU - Hughes, A. L. PY - 1994 DA - 1994// TI - The evolution of functionally novel proteins after gene duplication. JO - Proceedings of the Royal Society of London VL - 256 UR - https://doi.org/10.1098/rspb.1994.0058 DO - 10.1098/rspb.1994.0058 ID - Hughes1994 ER - TY - CHAP AU - Hughes, A. L. PY - 1999 DA - 1999// BT - Adaptive evolution of genes and genomes. PB - New York CY - Oxford Press ID - Hughes1999 ER - TY - JOUR AU - Force, A. AU - Lynch, M. AU - Pickett, B. AU - Amores, A. AU - Yan, Y. L. AU - Postlethwait, J. H. PY - 1999 DA - 1999// TI - Preservation of duplicate genes by complementary, degenerative mutations. JO - Genetics VL - 151 ID - Force1999 ER - TY - JOUR AU - Stoltzfus, A. PY - 1999 DA - 1999// TI - On the possibility of constructive neutral evolution JO - J Mol Evol VL - 49 UR - https://doi.org/10.1007/PL00006540 DO - 10.1007/PL00006540 ID - Stoltzfus1999 ER - TY - JOUR AU - Goodman, M. AU - Czelusniak, J. AU - Koop, B. F. AU - Tagle, D. A. AU - Slightom, J. L. PY - 1987 DA - 1987// TI - Globins: a case study in molecular phylogeny JO - Cold Spring Harbor Symp Quant Biol VL - 52 UR - https://doi.org/10.1101/SQB.1987.052.01.096 DO - 10.1101/SQB.1987.052.01.096 ID - Goodman1987 ER - TY - JOUR AU - He, X. AU - Zhang, J. PY - 2005 DA - 2005// TI - Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution JO - Genetics VL - 169 UR - https://doi.org/10.1534/genetics.104.037051 DO - 10.1534/genetics.104.037051 ID - He2005 ER - TY - JOUR AU - Lynch, M. AU - Force, A. PY - 2000 DA - 2000// TI - The probability of duplicate gene preservation by subfunctionalization JO - Genetics VL - 154 ID - Lynch2000 ER - TY - JOUR AU - Postlethwait, J. H. AU - Amores, A. AU - Cresko, W. AU - Singer, A. AU - Yan, Y. PY - 2004 DA - 2004// TI - Subfunction partitioning, the teleost radiation and the annotation of the human genome. JO - Trends Genet VL - 20 UR - https://doi.org/10.1016/j.tig.2004.08.001 DO - 10.1016/j.tig.2004.08.001 ID - Postlethwait2004 ER - TY - JOUR AU - Byun-McKay, S. A. AU - Geeta, R. PY - 2007 DA - 2007// TI - Protein subcellular relocalization: a new perspective on the origin of novel genes. JO - Trends in Ecology and Evolution VL - 22 UR - https://doi.org/10.1016/j.tree.2007.05.002 DO - 10.1016/j.tree.2007.05.002 ID - Byun-McKay2007 ER - TY - JOUR AU - Chain, F. J. J. AU - Evans, B. J. PY - 2006 DA - 2006// TI - Molecular evolution of duplicate genes in Xenopus laevis is consistent with multiple mechanisms for their retained expression. JO - PLoS Genetics VL - 2 UR - https://doi.org/10.1371/journal.pgen.0020056 DO - 10.1371/journal.pgen.0020056 ID - Chain2006 ER - TY - JOUR AU - Su, Z. AU - Wang, J. AU - Yu, J. AU - Huang, X. AU - Gu, X. PY - 2006 DA - 2006// TI - Evolution of alternative splicing after gene duplication. JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.4197006 DO - 10.1101/gr.4197006 ID - Su2006 ER - TY - JOUR AU - Moore, R. C. AU - Purugganan, M. D. PY - 2003 DA - 2003// TI - The early stages of duplicate gene evolution. JO - Proc Nat Acad Sci VL - 100 UR - https://doi.org/10.1073/pnas.2535513100 DO - 10.1073/pnas.2535513100 ID - Moore2003 ER - TY - JOUR AU - Jordan, I. K. AU - Wolf, Y. I. AU - Koonin, E. V. PY - 2004 DA - 2004// TI - Duplicated genes evolve slower than singletons despite the initial rate increase. JO - BMC Evolutionary Biology VL - 4 UR - https://doi.org/10.1186/1471-2148-4-22 DO - 10.1186/1471-2148-4-22 ID - Jordan2004 ER - TY - JOUR AU - Nembaware, V. AU - Crum, K. AU - Kelson, J. AU - Seoighe, C. PY - 2002 DA - 2002// TI - Impact of the presence of paralogs on sequence divergence in a set of mouse-human orthologs JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.270902 DO - 10.1101/gr.270902 ID - Nembaware2002 ER - TY - JOUR AU - Dehal, R. AU - Boore, J. PY - 2005 DA - 2005// TI - Two rounds of whole genome duplication in the ancestral vertebrate JO - PLoS Biology VL - 3 UR - https://doi.org/10.1371/journal.pbio.0030314 DO - 10.1371/journal.pbio.0030314 ID - Dehal2005 ER - TY - CHAP AU - Allendorf, F. AU - Thorgaard, G. ED - Turner, B. J. PY - 1984 DA - 1984// TI - Tetraploidy and the evolution of salmonid fishes. BT - Evolutionary genetics of fishes PB - New York CY - Plenum Press UR - https://doi.org/10.1007/978-1-4684-4652-4_1 DO - 10.1007/978-1-4684-4652-4_1 ID - Allendorf1984 ER - TY - JOUR AU - Evans, B. J. AU - Kelley, D. B. AU - Tinsley, R. C. AU - Melnick, D. J. AU - Cannatella, D. C. PY - 2004 DA - 2004// TI - A mitochondrial DNA phylogeny of clawed frogs: phylogeography on sub-Saharan Africa and implications for polyploid evolution JO - Mol Phylogenet Evol VL - 33 UR - https://doi.org/10.1016/j.ympev.2004.04.018 DO - 10.1016/j.ympev.2004.04.018 ID - Evans2004 ER - TY - JOUR AU - Hughes, M. K. AU - Hughes, A. L. PY - 1993 DA - 1993// TI - Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. JO - Mol Biol Evol VL - 10 ID - Hughes1993 ER - TY - JOUR AU - Morin, R. D. AU - Chang, E. AU - Petrescu, A. AU - Liao, N. AU - Griffith, M. AU - Kirkpatrick, R. AU - Butterfield, Y. S. AU - Young, A. C. AU - Stott, J. AU - Barber, S. AU - Babakaiff, R. AU - Dickson, M. C. AU - Matsuo, C. AU - Wong, D. AU - Yang, G. S. AU - Smailus, D. E. AU - Wetherby, K. D. AU - Kwong, P. N. AU - Grimwood, J. AU - P., B. C. AU - Brown-Jogn, M. AU - Reddix-Dugue, N. D. AU - Mayo, M. AU - Schnmutz, J. AU - Beland, J. AU - Park, M. AU - Gibson, S. AU - Olson, T. AU - Bouffard, G. G. AU - Tsai, M. AU - Featherstone, R. AU - Shand, S. AU - Siddiqui, A. S. AU - Jang, W. AU - Lee, E. AU - Klein, S. L. AU - Blakesley, R. W. AU - Zeeberg, B. R. AU - Narasimban, S. AU - Weinstein, J. N. AU - Pannacchio, S. P. AU - Myers, R. M. AU - Green, E. D. AU - Wagner, L. AU - Gerhard, D. S. AU - Marra, M. A. AU - Jones, S. J. M. AU - Holt, R. A. PY - 2006 DA - 2006// TI - Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling. JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.4871006 DO - 10.1101/gr.4871006 ID - Morin2006 ER - TY - STD TI - Hellsten U, Khokha MK, Grammer TC, Harland RM, Richardson P, Rokhsar DS: Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis. BMC Evolutionary Biology. 2007, 5 (31): ID - ref42 ER - TY - JOUR AU - Wyckoff, G. J. AU - Malcom, C. M. AU - Vallender, E. J. AU - Lahn, B. T. PY - 2005 DA - 2005// TI - A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate. JO - Trends Genet VL - 21 UR - https://doi.org/10.1016/j.tig.2005.05.005 DO - 10.1016/j.tig.2005.05.005 ID - Wyckoff2005 ER - TY - JOUR AU - Hughes, A. L. AU - Ota, T. AU - Nei, M. PY - 1990 DA - 1990// TI - Positive darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules. JO - Mol Biol Evol VL - 7 ID - Hughes1990 ER - TY - JOUR AU - Zhang, J. PY - 2000 DA - 2000// TI - Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. JO - J Mol Evol VL - 50 ID - Zhang2000 ER - TY - JOUR AU - Evans, B. J. AU - Kelley, D. B. AU - Melnick, D. J. AU - Cannatella, D. C. PY - 2005 DA - 2005// TI - Evolution of RAG-1 in polyploid clawed frogs JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi104 DO - 10.1093/molbev/msi104 ID - Evans2005 ER - TY - CHAP AU - Nieuwkoop, P. D. AU - Faber, J. PY - 1956 DA - 1956// BT - Normal table of Xenopus laevis PB - Amsterdam CY - Daudin ID - Nieuwkoop1956 ER - TY - JOUR AU - Kimura, M. PY - 1980 DA - 1980// TI - Average time until fixation of a mutant allele in a finite population under continued mutant pressure: studies by analytical, numerical, and pseudosampling methods. JO - Proc Nat Acad Sci VL - 77 UR - https://doi.org/10.1073/pnas.77.1.522 DO - 10.1073/pnas.77.1.522 ID - Kimura1980 ER - TY - JOUR AU - Takahata, N. AU - Maruyama, T. PY - 1979 DA - 1979// TI - Polyploidization and loss of duplicate gene expression: a theoretical study with application to tetraploid fish. JO - Proc Nat Acad Sci VL - 76 UR - https://doi.org/10.1073/pnas.76.9.4521 DO - 10.1073/pnas.76.9.4521 ID - Takahata1979 ER - TY - JOUR AU - Watterson, G. A. PY - 1983 DA - 1983// TI - On the time for gene silencing at duplicate loci. JO - Genetics VL - 105 ID - Watterson1983 ER - TY - JOUR AU - Gaut, B. S. AU - Doebley, J. F. PY - 1997 DA - 1997// TI - DNA sequence evidence for the segmental allotetraploid origin of maize JO - Proc Nat Acad Sci VL - 94 UR - https://doi.org/10.1073/pnas.94.13.6809 DO - 10.1073/pnas.94.13.6809 ID - Gaut1997 ER - TY - JOUR AU - Allendorf, F. W. AU - Danzmann, R. G. PY - 1997 DA - 1997// TI - Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in rainbow trout. JO - Genetics VL - 145 ID - Allendorf1997 ER - TY - JOUR AU - Sammut, B. AU - Marcuz, A. AU - Du Pasquier, L. PY - 2002 DA - 2002// TI - The fate of duplicated major histocompatibility complex class 1a genes in a dodecaploid amphibian, Xenopus ruwenzoriensis. JO - European Journal of Immunology VL - 32 UR - https://doi.org/3.0.CO;2-6 DO - 3.0.CO;2-6 ID - Sammut2002 ER - TY - JOUR AU - Osborn, T. C. AU - Pires, J. C. AU - Birchler, J. A. AU - Auger, D. L. AU - Chen, Z. J. AU - Lee, H. AU - Comai, L. AU - Madlung, A. AU - Doerge, R. W. AU - Colot, V. AU - Martienssen, R. A. PY - 2003 DA - 2003// TI - Understanding mechanisms of novel gene expression in polyploids. JO - Trends Genet VL - 19 UR - https://doi.org/10.1016/S0168-9525(03)00015-5 DO - 10.1016/S0168-9525(03)00015-5 ID - Osborn2003 ER - TY - JOUR AU - Müller, W. P. PY - 1977 DA - 1977// TI - Diplotene chromosomes of Xenopus hybrid oocytes. JO - Chromosoma VL - 59 UR - https://doi.org/10.1007/BF00327969 DO - 10.1007/BF00327969 ID - Müller1977 ER - TY - JOUR AU - Davis, J. C. AU - Petrov, D. A. PY - 2004 DA - 2004// TI - Preferential duplication of conserved proteins in eukaryotic genomes JO - PLoS Biology VL - 2 UR - https://doi.org/10.1371/journal.pbio.0020055 DO - 10.1371/journal.pbio.0020055 ID - Davis2004 ER - TY - JOUR AU - Brunet, F. G. AU - Crollius, H. R. AU - Paris, M. AU - Aury, J. AU - Gibert, P. AU - Jaillon, O. AU - Laudet, V. AU - Robinson-Rechavi, M. PY - 2006 DA - 2006// TI - Gene loss and evolutionary rates following whole-genome duplication in teleost fishes. JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msl049 DO - 10.1093/molbev/msl049 ID - Brunet2006 ER - TY - JOUR AU - Shakhnovich, B. E. AU - Koonin, E. V. PY - 2006 DA - 2006// TI - Origins and impact of constraints in evolution of gene families JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.5346206 DO - 10.1101/gr.5346206 ID - Shakhnovich2006 ER - TY - CHAP AU - Scannell, D. R. AU - Wolfe, K. H. PY - 2007 DA - 2007// TI - A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast. BT - Genome Res ID - Scannell2007 ER - TY - STD TI - Ohno S: Ancient linkage groups and frozen accidents. Nature. 1973, 244 (259-262): ID - ref60 ER - TY - JOUR AU - Golding, G. B. AU - Dean, A. M. PY - 1998 DA - 1998// TI - The structural basis of molecular adaptation. JO - Mol Biol Evol VL - 15 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025932 DO - 10.1093/oxfordjournals.molbev.a025932 ID - Golding1998 ER - TY - JOUR AU - Wagner, A. PY - 2001 DA - 2001// TI - The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes. JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003913 DO - 10.1093/oxfordjournals.molbev.a003913 ID - Wagner2001 ER - TY - JOUR AU - Adams, K. L. PY - 2007 DA - 2007// TI - Evolution of duplicate gene expression in polyploid and hybrid plants. JO - Journal of Heredity VL - 98 UR - https://doi.org/10.1093/jhered/esl061 DO - 10.1093/jhered/esl061 ID - Adams2007 ER - TY - JOUR AU - Blanc, G. AU - Wolfe, K. H. PY - 2004 DA - 2004// TI - Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution JO - Plant Cell VL - 16 UR - https://doi.org/10.1105/tpc.021410 DO - 10.1105/tpc.021410 ID - Blanc2004 ER - TY - JOUR AU - Wang, J. AU - Tian, L. AU - Lee, H. S. AU - Wei, N. E. AU - Jiang, H. AU - Watson, B. AU - Madlung, A. AU - Osborn, T. C. AU - Doerge, R. W. AU - Comai, L. AU - Chen, Z. J. PY - 2006 DA - 2006// TI - Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. JO - Genetics VL - 172 UR - https://doi.org/10.1534/genetics.105.047894 DO - 10.1534/genetics.105.047894 ID - Wang2006 ER - TY - JOUR AU - Adams, K. L. AU - Cronn, R. AU - Percifeld, R. AU - Wendel, J. F. PY - 2003 DA - 2003// TI - Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. JO - Proc Nat Acad Sci VL - 100 UR - https://doi.org/10.1073/pnas.0630618100 DO - 10.1073/pnas.0630618100 ID - Adams2003 ER - TY - JOUR AU - Albertin, W. AU - Balliau, T. AU - Brabant, P. AU - Chévre, A. M. AU - Eber, F. AU - Malosse, C. AU - Thiellement, H. PY - 2006 DA - 2006// TI - Numerous and rapid nonstochastic modifications of gene products in newly synthesized Brassica napus allotetraploids. JO - Genetics VL - 173 UR - https://doi.org/10.1534/genetics.106.057554 DO - 10.1534/genetics.106.057554 ID - Albertin2006 ER - TY - JOUR AU - Hegarty, M. J. AU - Barker, G. L. AU - Wilson, I. D. AU - Abbott, R. J. AU - Edwards, K. J. AU - Hiscock, S. J. PY - 2006 DA - 2006// TI - Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication. JO - Current Biology VL - 16 UR - https://doi.org/10.1016/j.cub.2006.06.071 DO - 10.1016/j.cub.2006.06.071 ID - Hegarty2006 ER - TY - JOUR AU - Gu, Z. AU - Nicolae, D. AU - Lu, H. H. S. AU - Li, W. H. PY - 2002 DA - 2002// TI - Rapid divergence in expression data between duplicate genes inferred from microarray data. JO - Trends Genet VL - 18 UR - https://doi.org/10.1016/S0168-9525(02)02837-8 DO - 10.1016/S0168-9525(02)02837-8 ID - Gu2002 ER - TY - JOUR AU - Papp, B. AU - Pál, C. AU - Hurst, L. D. PY - 2003 DA - 2003// TI - Evolution of cis-regulatory elements in duplicated genes of yeast. JO - Trends Genet VL - 19 UR - https://doi.org/10.1016/S0168-9525(03)00174-4 DO - 10.1016/S0168-9525(03)00174-4 ID - Papp2003 ER - TY - JOUR AU - Makova, K. D. AU - Li, W. H. PY - 2003 DA - 2003// TI - Divergence in the spatial pattern of gene expression between human duplicate genes. JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.1133803 DO - 10.1101/gr.1133803 ID - Makova2003 ER - TY - JOUR AU - Kim, J. AU - Shin, S. H. AU - Thoma, S. AU - Li, W. H. AU - Patterson, S. E. PY - 2006 DA - 2006// TI - Patterns of expansion and expression divergence in the plant polygalacturonase gene family. JO - Genome Biol VL - 7 UR - https://doi.org/10.1186/gb-2006-7-9-r87 DO - 10.1186/gb-2006-7-9-r87 ID - Kim2006 ER - TY - JOUR AU - Gu, X. AU - Su, Z. PY - 2007 DA - 2007// TI - Tissue-driven hypothesis of genomic evolution and sequence-expression correlations. JO - Proc Nat Acad Sci VL - 104 UR - https://doi.org/10.1073/pnas.0610797104 DO - 10.1073/pnas.0610797104 ID - Gu2007 ER - TY - JOUR AU - Liao, B. Y. AU - Zhang, J. PY - 2006 DA - 2006// TI - Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj119 DO - 10.1093/molbev/msj119 ID - Liao2006 ER - TY - JOUR AU - Spring, J. PY - 1997 DA - 1997// TI - Vertebrate evolution by interspecific hybridization – are we polyploid? JO - FEBS Letters VL - 400 UR - https://doi.org/10.1016/S0014-5793(96)01351-8 DO - 10.1016/S0014-5793(96)01351-8 ID - Spring1997 ER - TY - JOUR AU - Taylor, J. S. AU - Braasch, I. AU - Frickey, T. AU - Meyer, A. AU - Van de Peer, Y. PY - 2003 DA - 2003// TI - Genome duplication, a trait shared by 22,000 species of ray-finned fish JO - Genome Res VL - 13 UR - https://doi.org/10.1101/gr.640303 DO - 10.1101/gr.640303 ID - Taylor2003 ER - TY - JOUR AU - Rastogi, S. AU - Liberles, D. A. PY - 2005 DA - 2005// TI - Subfunctionalization of duplicated genes as a transition state to neofunctionalization. JO - BMC Evolutionary Biology VL - 5 UR - https://doi.org/10.1186/1471-2148-5-28 DO - 10.1186/1471-2148-5-28 ID - Rastogi2005 ER - TY - JOUR AU - Amores, A. AU - Suzuki, T. AU - Yan, Y. AU - Pomeroy, J. AU - Singer, A. AU - Amemiya, C. AU - Postlethwait, J. H. PY - 2004 DA - 2004// TI - Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish. JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.1717804 DO - 10.1101/gr.1717804 ID - Amores2004 ER - TY - JOUR AU - Huminiecki, L. AU - Wolfe, K. H. PY - 2004 DA - 2004// TI - Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse. JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.2705204 DO - 10.1101/gr.2705204 ID - Huminiecki2004 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - CHAP AU - Myers, E. W. AU - Miller, W. PY - 1988 DA - 1988// TI - Optimal alignments in linear space BT - Computer Applications in the Biosciences ID - Myers1988 ER - TY - JOUR AU - Pearson, W. R. AU - Lipman, D. J. PY - 1988 DA - 1988// TI - Improved tools for biological sequence analysis JO - Proc Nat Acad Sci VL - 85 UR - https://doi.org/10.1073/pnas.85.8.2444 DO - 10.1073/pnas.85.8.2444 ID - Pearson1988 ER - TY - CHAP AU - Maddison, D. R. AU - Maddison, W. P. PY - 2000 DA - 2000// BT - MacClade PB - Sunderland CY - Sinauer Associates ID - Maddison2000 ER - TY - JOUR AU - Yang, Z. PY - 1997 DA - 1997// TI - PAML: a program package for phylogenetic analysis by maximum likelihood. JO - CABIOS VL - 13 ID - Yang1997 ER - TY - JOUR AU - Zhang, J. AU - Nielsen, R. AU - Yang, Z. PY - 2005 DA - 2005// TI - Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi237 DO - 10.1093/molbev/msi237 ID - Zhang2005 ER - TY - JOUR AU - Malone, J. H. AU - Hawkins, D. L. AU - Michalak, P. PY - 2006 DA - 2006// TI - Sex biased gene expression in a ZW sex determination system. JO - J Mol Evol VL - 63 UR - https://doi.org/10.1007/s00239-005-0263-4 DO - 10.1007/s00239-005-0263-4 ID - Malone2006 ER - TY - CHAP AU - Gurvich, N. AU - Berman, M. G. AU - Wittner, B. S. AU - Gentleman, R. C. AU - Klein, P. S. AU - Green, J. B. A. PY - 2005 DA - 2005// TI - Association of valproate-induced teratogenesis with histone deacetylase inhibition in vivo BT - The FASEB Journal ID - Gurvich2005 ER - TY - JOUR AU - Sinner, S. AU - Kirilenko, P. AU - Rankin, S. AU - Wei, E. AU - Howard, L. AU - Korfran, M. AU - Heasman, J. AU - Woodland, H. R. AU - Zorn, A. M. PY - 2006 DA - 2006// TI - Global analysis of the transcriptional network controlling Xenopus endoderm formation. JO - Development VL - 133 UR - https://doi.org/10.1242/dev.02358 DO - 10.1242/dev.02358 ID - Sinner2006 ER - TY - JOUR AU - Hammond, J. P. AU - Boroadley, M. R. AU - Craigon, D. J. AU - Higgins, J. AU - Emmerson, Z. F. AU - Townsend, H. J. AU - White, P. J. AU - May, S. T. PY - 2005 DA - 2005// TI - Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species. JO - Plant Methods VL - 10 ID - Hammond2005 ER -