|
Protein
|
Taxa
|
Sites
|
w(ΠF)
|
w(Π1)
|
w(Π2)
|
w(Π3)
|
w(Π4)
|
ΛlnL
|
|---|
|
Carboxyl_trans
|
36
|
212
|
0.74
|
0.11
|
0.06
|
0.00
|
0.10
|
67.16
|
|
CTP-synthetase
|
65
|
212
|
0.28
|
0.29
|
0.13
|
0.04
|
0.24
|
225.24
|
|
DNA topo IV
|
49
|
228
|
0.58
|
0.15
|
0.05
|
0.02
|
0.21
|
162.77
|
|
Filament
|
36
|
210
|
0.81
|
0.10
|
0.00
|
0.05
|
0.05
|
39.58
|
|
Glu_synth_NTN
|
40
|
253
|
0.66
|
0.13
|
0.04
|
0.01
|
0.17
|
76.31
|
|
HSP70
|
34
|
432
|
0.65
|
0.17
|
0.02
|
0.0002
|
0.16
|
136.71
|
|
ILVD_EDD
|
51
|
310
|
0.65
|
0.14
|
0.06
|
0.01
|
0.14
|
181.56
|
|
MCM
|
40
|
220
|
0.65
|
0.18
|
0.03
|
0.00
|
0.14
|
74.38
|
|
MreB
|
32
|
275
|
0.52
|
0.20
|
0.07
|
0.00
|
0.22
|
141.87
|
|
Poty_coat
|
34
|
212
|
0.60
|
0.17
|
0.04
|
0.02
|
0.18
|
125.57
|
|
SecA
|
70
|
203
|
0.40
|
0.24
|
0.09
|
0.08
|
0.19
|
217.82
|
|
Usher
|
36
|
317
|
0.78
|
0.10
|
0.02
|
0.004
|
0.10
|
76.11
|
|
HSP90
|
54
|
459
|
0.37
|
0.19
|
0.05
|
0.09
|
0.30
|
279.92
|
|
NuoF
|
41
|
405
|
0.37
|
0.20
|
0.11
|
0.04
|
0.27
|
186.40
|
|
Cpn60
|
41
|
466
|
0.52
|
0.19
|
0.04
|
0.03
|
0.22
|
257.04
|
|
MPP
|
43
|
203
|
0.73
|
0.13
|
0.03
|
0.00
|
0.11
|
74.82
|
|
α-tubulin
|
54
|
375
|
0.46
|
0.16
|
0.04
|
0.01
|
0.33
|
90.05
|
|
β-tubulin
|
46
|
382
|
0.59
|
0.15
|
0.03
|
0.02
|
0.21
|
69.84
|
|
Actin
|
48
|
363
|
0.58
|
0.12
|
0.03
|
0.02
|
0.25
|
41.50
|
|
EF-1α
|
38
|
361
|
0.60
|
0.15
|
0.05
|
0.00
|
0.21
|
104.78
|
|
EF-2
|
37
|
669
|
0.52
|
0.16
|
0.06
|
0.03
|
0.22
|
273.30
|
|
enolase
|
60
|
305
|
0.63
|
0.13
|
0.06
|
0.00
|
0.19
|
24.08
|
|
myoglobin
|
80
|
153
|
0.59
|
0.14
|
0.06
|
0.03
|
0.17
|
35.73
|
|
lipoprotein
|
23
|
762
|
0.77
|
0.10
|
0.02
|
0.01
|
0.10
|
70.70
|
|
lysozyme
|
36
|
127
|
0.61
|
0.12
|
0.03
|
0.02
|
0.23
|
18.23
|
- ΛlnL is the likelihood difference between the cF mixture model and the single frequency model (JTT + F + Γ). The p-values associated with these differences, calculated from χ2 tests with 4 degrees of freedom, are very significant in all cases (p < 0.01). The actual p-values would be even smaller as the tests are conservative (see the main text for a discussion).
