Figure 3
From: Primate-specific spliced PMCHL RNAs are non-protein coding in human and macaque tissues
Phylogenetic analyses of the PMCH and PMCHL genes. Phylogenetic analyses of (A) the alignable PMCH and PMCHL sequences, of (B) the region encompassing exon 1 to exon 2b of PMCHL, and of (C) the region encompassing exon 5 to exon 6 of PMCHL. All three unrooted trees were obtained using a neighbour-joining (NJ) method. Branches also found by maximum likelihood (G option) and parsimony are indicated with ** (p < 0.01) and +, respectively. Grey oval indicates unresolved localization of the platyrrhine PMCH branch. Mus musculus (MMU) and Rattus norvegicus (RNO) are used as outgroups in (A). GenBank accession numbers and positions in http://www.ensembl.org are as indicated in Figure 2, and the following: PMCH PPA [GenBank:EU916247], PMCH PTR [GenBank:EU916248], PMCH HLA [GenBank:EU916249], PMCH MFA [GenBank:EU916243], PMCH CAE [GenBank:EU916244], PMCH CCA [GenBank:EU916246], PMCH SOE [GenBank:EU916245], PMCH TSY [GenBank:EU916242], PMCH RNO [GenBank:NM012625], PMCH MMU [GenBank:NT039500], PMCHL1 HSA [GenBank:AY028318, GenBank: AY028319], PMCHL2 HSA [GenBank:AY028320, GenBank:AY028321], PMCHL1 PTR [GenBank:EF043265].