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Table 4 Supports for two suprafamilial groupings according to various datasets: the three separate (mitochondrial, exon and intron genes), the three combinations of two datasets and all genes concatenated (conc).

From: Suprafamilial relationships among Rodentia and the phylogenetic effect of removing fast-evolving nucleotides in mitochondrial, exon and intron fragments

  Myomorpha + Castorimorpha + Anomaluromorpha Sciuromorpha + Hystricomorpha + "Mouse-related" clade
  Myo + Ano Myo + Casto Casto + Ano Sciuro + Hystrico Hystrico basal Sciuro basal
MITO (2126) 10/0.17 14/0.37 15/0.39 5/- -/- 3/0.48
R-MITO (1861) -/- 2/- 9/- 29/- 4/0.33 2/-
EXON (2571) 38/- 29/0.70 -/0.05 5/0.08 37/0.74 16/-
R-EXON (2258) 31/0.7 16/0.2 1/0.09 17/0.09 57/0.81 11/0.08
INTRON (2897) 100/1.00 -/- -/- 54/0.69 30/0.28 16/-
R-INTRON (2361) 77/0.79 20/0.14 3/0.08 95/1.00 -/- 5/-
MITO + EXON (4697) 32/0.17 56/0.74 7/0.09 4/- 26/- 54/0.99
R-MITO + R-EXON (4119) 5/- -/- -/- 30/0.16 46/0.57 14/0.27
MITO + INTRON (5023) 95/0.99 3/- 2/- 37/0.43 26/0.13 37/0.45
R-MITO + R-INTRON (4222) 74/0.70 26/0.21 -/0.08 98/1.00 -/- 2/-
EXON + INTRON (5468) 90/0.97 10/- -/- 44/0.38 46/0.57 10/-
R-EXON + R-INTRON (4619) 84/0.92 15/0.06 1/- 90/1.00 7/- 5/-
CONC (7594) 88/0.93 12/0.06 27/0.07 37/0.23 36/0.32 27/0.45
R-CONC (6480) 73/0.87 -/- -/- 91/1.00 5/- 4/-
  1. Each dataset is analysed with and without (noted R for reduced) fast-evolving sites and the numbers of characters analysed is indicated in parenthesis. In each case, the bootstrap support resulting from 100 replications in partitioned maximum likelihood analysis with RaxML and the posterior probability in Bayesian analysis with MrBayes are indicated from right to left, respectively for the three possible relationships among the "mouse-related clade" (Myomorpha, Castorimorpha and Anomaluromorpha) and between the three main rodent lineages (Sciuromorpha, Hystricomorpha and "Mouse-related" clade).