Skip to main content

Table 2 Summary of molecular diversity indices and population expansion test statistics

From: Phylogeography and genetic diversity of a widespread Old World butterfly, Lampides boeticus(Lepidoptera: Lycaenidae)

  

Molecular Diversity Indices

Tajima's D

Fu's F

Mismatch Distribution

 
 

n

No.

S

k(var)

h± SD

π ± SD

D

P

F

P

SSD

P(SSD)

Ï„

θ0

θ1

Age in My

COI

                

clade A

35

8

8

0.756 (0.325)

0.556 ± 0.094

0.00066 ± 0.00017

-1.791

0.0125

-3.403 × 1037

0.000

0.00872

0.252

0.781

0.000

99999

0.52

grade B

17

7

9

2.132 (1.555)

0.853 ± 0.053

0.00181 ± 0.00032

-0.717

0.264

-23.81

0.000

0.0136

0.406

1.129

1.276

105.547

0.75

clade A + grade B

52

14

16

2.141 (1.463)

0.782 ± 0.053

0.00187 ± 0.00023

-1.306

0.0801

-26.995

0.000

0.00585

0.761

3.457

0.000

3.905

2.30

cytB

                

clade A

35

9

7

0.965 (0.453)

0.692 ± 0.054

0.00185 ± 0.00029

-1.393

0.0725

-30.526

0.000

0.108

0.172

1.139

0.004

99999

N/A

grade B

17

6

6

1.309 (0.737)

0.779 ± 0.073

0.00236 ± 0.00045

-0.880

0.217

-28.290

0.000

0.004

0.675

1.408

0.000

99999

N/A

clade A + grade B

52

14

10

2.016 (1.330)

0.830 ± 0.030

0.00387 ± 0.00034

-0.546

0.334

-27.010

0.000

0.00150

0.855

2.02

0.533

9.341

N/A

  1. Number of samples (n), number of haplotypes (No.), number of polymorphic nucleotide sites (S), average number of nucleotide differences (k) and variance, haplotype diversity (h) and standard deviation, and nucleotide diversity (Ï€) and standard deviation calculated for each gene in the two largest and most widespread clades of Lampides boeticus. Tajima's D and Fu's F test statistics with probability values for deviation from neutral evolution and test statistics for mismatch distributions of each gene (Fig. 3), with estimates of time since expansion. Reliable estimates for cytB divergence rates are not available for the calculation of time since expansion. Significant P values are bold.