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Table 2 Pseudogenes in all sequenced spheroid body genome fragments (totalling 192335 bp) and pseudogenes identified in the Cyanothece sp. ATCC 51142 genome region shown in Figure 1 (63344 bp)

From: The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution

No.

Name

Best BlastX hit

Organism

Accession

e-value

sbp1*

fdx N*

FdxN

Cyanothece sp. PCC 8801

AAC33373.1

0.070

sbp2*

fld A*

Flavodoxin, long chain

Crocosphaera watsonii WH 8501

ZP_00515759.1

2e-05

sbp3*

sbp 3*

hypothetical protein CwatDRAFT_1967

Crocosphaera watsonii WH 8501

ZP_00517249.1

7e-05

sbp4*

sbp 4*

hemolysin

Cyanothece sp. CCY0110

ZP_01728583.1

3e-09

sbp5*

sbp 5*

Putative esterase

Crocosphaera watsonii WH 8501

ZP_00514941.1

6e-16

sbp6*

ubi H*

COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Nostoc punctiforme PCC 73102

ZP_00110350.1

2e-17

sbp7*

sbp 7*

hypothetical protein CY0110_23906

Cyanothece sp. CCY0110

ZP_01727952.1

5e-09

sbp8*

sbp 8*

hypothetical protein CY0110_11227

Cyanothece sp. CCY0110

ZP_01730915.1

1e-18

sbp9*

sbp 9*

Peptidase S49, SppA 67 kDa type:Peptidase S49, SppA

Crocosphaera watsonii WH 8501

ZP_00518433.1

3e-09

sbp10*

sbp 10*

GDP-D-mannose dehydratase

Cyanothece sp. CCY0110

ZP_01730804.1

1e-131

sbp11*

sbp 11*

NAD-dependent epimerase/dehydratase

Crocosphaera watsonii WH 8501

ZP_00513970.1

5e-103

sbp12*

sbp 12*

hypothetical protein CwatDRAFT_2668

Crocosphaera watsonii WH 8501

ZP_00517115.1

3e-10

sbp13*

uma 4*

Uma4 (transposase homolog)

Microcystis aeruginosa PCC 7806

AF183408_15

4e-05

sbp14*

sbp 14*

hypothetical protein CY0110_27355

Cyanothece sp. CCY0110

ZP_01729498.1

9e-07

sbp15*

sbp 15*

thioredoxin reductase

Lyngbya sp. PCC 8106

ZP_01622501.1

8e-88

sbp16*

sbp 16*

putative transposase

Lyngbya sp. PCC 8106

ZP_01618921.1

6e-65

sbp17*

lld P*

hypothetical protein DSY2261

Desulfitobacterium hafniense Y51

YP_518494.1

1e-14

sbp18*

sbp 19*

Mg chelatase-related protein

Cyanothece sp. CCY0110

ZP_01732243.1

2e-06

sbp19*

sbp 20*

hypothetical protein CY0110_07314

Cyanothece sp. CCY0110

ZP_01728735.1

2e-103

sbp20*

rsb W*

Putative Anti-Sigma regulatory factor (Ser/Thr protein kinase)

Cyanothece sp. CCY0110

ZP_01726436.1

0.011

sbp21*

sbp 22*

Anti-Sigma-factor antagonist (STAS) and sugar transfersase

Cyanothece sp. CCY0110

ZP_01726435.1

7e-53

sbp22*

sbp 23*

transposase

Nostoc sp. PCC 7120

NP_484634.1

4e-20

sbp23*

IRK*

hypothetical protein CY0110_12822

Cyanothece sp. CCY0110

ZP_01729432.1

5e-28

sbp24*

orf AB*

orfAB

Nostoc sp. PCC 7120

AAC97588.1

3e-05

sbp25*

sbp 26*

Protein of unknown function DUF820

Crocosphaera watsonii WH 8501

ZP_00514570.1

2e-13

sbp26*

sbp 27*

probable sulfotransferase

Cyanothece sp. CCY0110

ZP_01732095.1

4e-50

sbp27*

sbp 28*

COG3464: Transposase and inactivated derivatives

Nostoc punctiforme PCC 73102

ZP_00108066.1

2e-11

sbp28*

s _TKc*

serine/threonine protein kinase

Cyanothece sp. CCY0110

ZP_01731251.1

4e-26

sbp29*

sbp 30*

hypothetical protein CwatDRAFT_4770

Crocosphaera watsonii WH 8501

ZP_00515299.1

8e-07

sbp30*

ded A*

DedA

Lyngbya sp. PCC 8106

ZP_01623614.1

2e-53

sbp31*

sbp 32*

hypothetical protein CY0110_03639

Cyanothece sp. CCY0110

ZP_01727528.1

5e-06

sbp32*

mel B *

Sodium:galactoside symporter

Crocosphaera watsonii WH 8501

ZP_00517271.1

5e-22

sbp33*

psb C*

photosystem II CP43 protein

Synechocystis sp. PCC 6803

NP_441119.1

1,0

sbp34*

psb D*

photosystem II D2 protein

Cyanothece sp. CCY0110

ZP_01728138.1

5e-05

cyp1*

cyp 1*

hypothetical protein CY0110_22382

Cyanothece sp. CCY0110

ZP_01727759.1

2e-11

  1. Pseudogenes within the nif-operon and downstream regions (genome regions shown in Figure 1) are indicated in grey.