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Table 2 Hits of BLASTp similarity between Tat and other Ty3/Gypsy and Retroviridae gags

From: Relationships of gag-pol diversity between Ty3/Gypsy and RetroviridaeLTR retroelements and the three kings hypothesis

Query: Retrosor1 gag

Query: Tat4-1 gag

Element

Score

E-value

Element

Score

E-value

Diaspora

50.4

5e-08

*KoRV

34.3

0.003

Calypso5-1

42.4

1e-05

*GALV

33.5

0.005

Ulysses

40.0

6e-05

*HERV-K10

32.0

0.015

*GALV

39.7

8e-05

*PERV-MSL

30.8

0.033

*KoRV

39.3

1e-04

*SRV-1

29.6

0.074

*MdEV

38.1

2e-04

*MPMV

29.6

0.074

*PERV-MSL

37.7

3e-04

*MuLV

29.6

0.074

Cer3

36.2

0.001

*SERV

29.3

0.097

Cyclops-2

36.2

0.001

*JSRV

28.9

0.13

*MuLV

34.3

0.003

   

Sushi-ichi

32.3

0.013

   

*BAEVM

28.9

0.15

   
  1. We only summarize the most significant (top) hits of similarity obtained with each search. Retroviridae gags belonging to class I are indicated with asterisks.
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BMC Ecology and Evolution

ISSN: 2730-7182

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