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Table 1 Nucleotide substitution rates estimated at non-CpG (K nCG ) and non-CpG prone (K nCGprone ) sites at fourfold degenerate and intronic sites in 1470 human-chimpanzee orthologues.

From: Effect of the assignment of ancestral CpG state on the estimation of nucleotide substitution rates in mammals

 

K nCG

K nCGprone

K nCG /K nCGprone

4-fold

0.0061 (0.0058,0.0064)

0.0079 (0.0073,0.0084)

0.771

Intronic

0.0092 (0.0089,0.0095)

0.0105 (0.0102,0.0109)

0.876

K4/K Int

0.663 (0.621,0.704)

0.750 (0.692,0.810)

 
  1. Non CpG sites were identified using CpG/non-CpG assignment. Numbers in parentheses show 95% confidence intervals estimated by bootstrapping the data by gene, 10000 times.
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BMC Ecology and Evolution

ISSN: 2730-7182

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