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Table 3 LRT statistics of branch specific model for Malus branch.

From: Molecular adaptation and expression evolution following duplication of genes for organellar ribosomal protein S13 in rosids

Gene

Parameters from MAtest1

M1-MAtest1 comparison

MAtest2-MAtest1 comparison

Selected positive sites

2δL

P Value

2δL

P Value

numit rps13

p0 = 0.6485, p1 = 0.2817, (p2 + p3 = 0.0698)

ω0 = 0.12, ω1 = 1, ω2 = 112.98

1.7396

0.4190

1.2140

0.2705

31H, 32Q, 117R (0.5 <P < 0.8)

nucp rps13

p0 = 0.9005, p1 = 0.0733, (p2 + p3 = 0.0262)

ω0 = 0.04, ω1 = 1, ω2 = 96.7

9.7274

0.0077 a

3.5026

0.0613

32Q, 105C

mt rps13

p0 = 0.6646, p1 = 0.3354, (p2 + p3 = 0) ω0 = 0, ω1 = 1, ω2 = 1

0

1

0

1

None

  1. aBoldface indicates the statistically significant difference (P < 0.05).