Skip to main content

Table 2 Bootstrap support values for basal branches of all methods applied.

From: ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales)

Software ProfDist PAUP* MrBayes RAxML
Model ITS2 Modeltest - Estimated
Analysis NJ PNJ prePNJ strPNJ NJ ML MP B ML
Nodes a 99 95 1001 100 91 - 82 0.86 -
  b 96 96 1001 96 99 93 86 1.00 98
  c 88 88 95 88 90 - 63 0.72 -
  d 100 99 1001 100 100 92 100 1.00 96
  e 62 55 53 60 - - 62 0.97 64
  f 100 100 1001 100 100 99 100 1.00 100
  g 87 91 88 96 86 67 80 0.98 93
  h 99 99 1001 99 100 100 100 1.00 100
  i 90 90 92 84 93 88 85 0.99 89
  j 97 98 1001 98 93 91 91 0.99 98
  k 97 96 1001 95 96 88 83 1.00 99
Figure 3 4
  1. The table supplements Fig. 3 and Fig. 4. Node "g" supports a monophyletic DO group and is printed in bold letters. Software used: ProfDist and PAUP*. Models of substitution: ITS2 = GTR with ITS2 substitution matrix, Modeltest: TVM+I+G with estimated parameters. Phylogenetic analysis: NJ = neighbour-joining, PNJ = profile neighbour-joining, prePNJ = profile neighbour-joining with predefined profiles, strPNJ = sequence-structure profile neighbour-joining, ML = maximum likelihood, B = Bayesian analysis (posterior probabilities), MP = maximum Parsimony. 1Predefined profiles for profile neighbour-joining.