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Table 2 Bootstrap support values for basal branches of all methods applied.

From: ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales)

Software

ProfDist

PAUP*

MrBayes

RAxML

Model

ITS2

Modeltest

-

Estimated

Analysis

NJ

PNJ

prePNJ

strPNJ

NJ

ML

MP

B

ML

Nodes

a

99

95

1001

100

91

-

82

0.86

-

 

b

96

96

1001

96

99

93

86

1.00

98

 

c

88

88

95

88

90

-

63

0.72

-

 

d

100

99

1001

100

100

92

100

1.00

96

 

e

62

55

53

60

-

-

62

0.97

64

 

f

100

100

1001

100

100

99

100

1.00

100

 

g

87

91

88

96

86

67

80

0.98

93

 

h

99

99

1001

99

100

100

100

1.00

100

 

i

90

90

92

84

93

88

85

0.99

89

 

j

97

98

1001

98

93

91

91

0.99

98

 

k

97

96

1001

95

96

88

83

1.00

99

Figure

3

4

  1. The table supplements Fig. 3 and Fig. 4. Node "g" supports a monophyletic DO group and is printed in bold letters. Software used: ProfDist and PAUP*. Models of substitution: ITS2 = GTR with ITS2 substitution matrix, Modeltest: TVM+I+G with estimated parameters. Phylogenetic analysis: NJ = neighbour-joining, PNJ = profile neighbour-joining, prePNJ = profile neighbour-joining with predefined profiles, strPNJ = sequence-structure profile neighbour-joining, ML = maximum likelihood, B = Bayesian analysis (posterior probabilities), MP = maximum Parsimony. 1Predefined profiles for profile neighbour-joining.