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Table 1 Best model and estimated substitution parameter values.

From: Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily

Gene

Cytochrome b

IRBP

GHR

Combined data

Length (bp)

1140

1233

931

3304

Best model

GTR+G+I

TVM+G+I

TVM+G+I

GTR+G+I

Ï€A

0.424

0.231

0.308

0.318

Ï€C

0.324

0.278

0.252

0.287

Ï€G

0.029

0.267

0.198

0.180

Ï€T

0.223

0.224

0.242

0.215

rA-C

0.036

1.321

1.011

1.867

rA-G

3.821

6.415

5.880

4.316

rA-T

0.210

0.931

0.836

3.101

rC-G

0.251

0.621

1.376

0.632

rC-T

5.453

6.415

5.880

29.243

rG-T

1.000

1.000

1.000

1.000

α

0.475

0.918

0.640

0.290

Pinv

0.410

0.281

0.059

0.215

  1. These values were estimated from maximum-likelihood analysis of each gene separately (cytochrome b, IRBP, and GHR, respectively) and of the combined data set.
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BMC Ecology and Evolution

ISSN: 2730-7182

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