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Table 4 Model selected and parameters values with their 95% credibility intervals when applicable (obtained with MRBAYES).

From: Tracing the colonization history of the Indian Ocean scops-owls (Strigiformes: Otus) with further insight into the spatio-temporal origin of the Malagasy avifauna

  Myoglobin TGFB2 ND2 ATP6 ND3 Cytochrome-b
Model K80 + Γ HKY + Γ GTR + Γ + I GTR + Γ + I GTR + Γ + I GTR + Γ + I
1st position NA NA GTR + Γ + I GTR + Γ + I SYM + Γ GTR + Γ + I
2nd position NA NA GTR + Γ + I GTR + Γ + I GTR + Γ GTR + Γ + I
3rd position NA NA GTR + Γ + I GTR + Γ + I HKY + Γ + I GTR + Γ
Freq A 0.25 0.25 (0.22–0.28) 0.37 (0.34–0.39) 0.33 (0.30–0.36) 0.32 (0.28–0.36) 0.32 (0.30–0.35)
Freq C 0.25 0.21 (0.18–0.24) 0.41 (0.39–0.43) 0.44 (0.41–0.46) 0.41 (0.37–0.45) 0.44 (0.42–0.47)
Freq G 0.25 0.24 (0.21–0.27) 0.06 (0.05–0.07) 0.07 (0.06–0.08) 0.09 (0.07–0.11) 0.08 (0.07–0.09)
Freq T 0.25 0.30 (0.27–0.33) 0.16 (0.15–0.18) 0.16 (0.14–0.18) 0.18 (0.16–0.21) 0.16 (0.14–0.17)
A-C NA NA 0.016 (0.012–0.020) 0.020 (0.013–0.027) 0.022 (0.013–0.032) 0.014 (0.009–0.020)
A-G NA NA 0.663 (0.607–0.718) 0.564 (0.484–0.642) 0.535 (0.429–0.637) 0.549 (0.474–0.621)
A-T NA NA 0.021 (0.014–0.029) 0.035 (0.022–0.050) 0.015 (0.005–0.029) 0.032 (0.019–0.047)
C-G NA NA 0.005 (0.0002–0.014) 0.024 (0.012–0.039) 0.007 (0.0002–0.218) 0.010 (0.0002–0.020)
C-T NA NA 0.232 (0.188–0.281) 0.323 (0.252–0.399) 0.327 (0.240–0.425) 0.321 (0.259–0.390)
G-T NA NA 0.062 (0.035–0.094) 0.035 (0.010–0.069) 0.094 (0.051–0.146) 0.074 (0.041–0.114)
Γ 0.10 (0.09–.12) 0.586 (0.382–0.936) 0.997 (0.826–1.195) 0.901 (0.676–1.158) 0.910 (0.604–1.295) 0.869 (0.702–1.069)
I NA NA 0.338 (0.302–0.374) 0.400 (0.345–0.447) 0.368 (0.287–0.433) 0.465 (0.426–0.501)
Ts/Tv 4.24 (3.08–5.75) 5.90 (4.32–7.795) NA NA NA NA
-ln (ML) 2198.81 2131.71 10556.45 6550.30 3266.29 8623.79
-ln (BI) 2442.98 2179.36 10582.97 6585.41 3305.87 8658.36
-ln (BI partitioned) NA NA 10161.23 6232.87 3146.47 8128.06
  1. NA means not applicable. Reported likelihood scores for the BI refer to the arithmetic mean.
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BMC Ecology and Evolution

ISSN: 2730-7182

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