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Table 3 Summary of TreeSAAP output.

From: Extreme primary and secondary protein structure variability in the chimeric male-transmitted cytochrome coxidase subunit II protein in freshwater mussels: Evidence for an elevated amino acid substitution rate in the face of domain-specific purifying selection

 

M seq

MCOX2-extension only

F seq

Amino Acid Property

1 -- 3

6 -- 8

1 -- 3

6 -- 8

1 -- 3

6 -- 8

Composition

 

neg/destab

    

Hydropathy

 

neg/destab

 

neg/destab

neg/stab

neg/destab

Isoelectric point

neg/stab

 

neg/stab

   

Molecular volume

pos/stab

neg/destab

pos/stab

   

Polar requirement

 

neg/destab

 

neg/destab

pos/stab

neg/destab

Polarity

 

neg/destab

pos/stab

neg/destab

pos/stab

neg/destab

Alpha-helical tendencies

     

neg/destab

Turn tendencies

 

neg/destab

 

neg/destab

 

neg/destab

  1. The six "most important" TreeSAAP categories according to [34]. Two additional properties (Alpha-helical tendencies and Turn tendencies) are given due to their potential importance to transmembrane helix formation. Absence of selection means neutrality.