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Table 2 EST distribution chart for organisms found with CIDE related domains

From: Molecular evolution of Cide family proteins: Novel domain formation in early vertebrates and the subsequent divergence

Organisms Found with Cide Related Domains

Species

Search Criterior

Tissue Distribution#

  

CIDE-N 37aa

CIDE-C 35aa

Cidea

Cideb

Cidec/Fsp27

Homo sapiens (human)

Mammals

281

126

BAT+, WAT, skin, heart, sympathetic trunk

liver, small intestine+, kidney, colon, lung, brain, thalamus, cervix, thymus, T-lymphocytes, lymph, placenta, stomach, prostate, testis, eye

WAT, white matter, brain, lung, skin, eye, breast, ovary, uterine, pancreas, colon, testis, nasopharynx

Macaca fascicularis

 

3

1

   

Macaca nemestrina

 

1

    

Macaca mulatta

 

1

1

   

Pongo pygmaeus

 

3

    

Papio anubis

 

2

    

Spermophilus lateralis

  

1

   

Mus musculus (mouse)

 

185

130

BAT+, mammary gland, salivary gland, aorta, thyroids, eye, head, lung, kidney

liver, kidney, colon, small intestine+, bowel, placenta

WAT+, mammary gland, salivary gland, thyroid, colon, lung, kidney, placenta

Rattus norvegicus

 

13

15

   

Rattus sp.

 

1

1

   

Sus scrofa

 

89

74

   

Bos taurus

 

98

90

   

Ovis aries

 

13

5

   

Capra hircus

 

1

    

Canis lupus familiaris

 

9

10

   

Macropus eugenii

 

2

2

   

Trichosurus vulpecula

 

11

9

   

Gallus gallus (chicken)

Birds

40

36

ovary, brain, caecal tonsil, intestinal lymphocyte, liver

 

liver, small intestine, fat body, intestinal lymphocyte, hearts

Taeniopygia guttata

 

4

4

   

Meleagris gallopavo

 

1

    

Xenopus tropicalis (X.tropicalis)

Amphibians

149

146

ovary, brain

liver, gut/intestine, fat body, oviduct

Small intestine, lung brain

Xenopus laevis

 

88

77

   

Ambystoma mexicanum

 

1

1

   

Danio rerio (zebrafish)

Bone Fishes

56

16

eyes

liver, gut/intestine

liver

Dicentrarchus labrax

 

1

1

   

Cyprinus carpio

 

1

1

   

Fundulus heteroclitus

 

4

3

   

Gasterosteus aculeatus

 

13

3

   

Gadus morhua

 

4

1

   

Misgurnus anguillicaudatus

 

1

    

Ictalurus furcatus

 

1

1

   

Oncorhynchus mykiss

 

30

30

   

Oncorhynchus nerka

 

1

1

   

Oryzias latipes (medaka)

 

49

44

 

liver

ovary

Pimephales promelas

 

3

    

Platichthys flesus

 

1

1

   

Plecoglossus altivelis altivelis

 

1

1

   

Salmo salar (Atlantic salmon)

 

12

15

testis

gut/intestine, head kidney, thymus, pyloric caecum

thyroid, thymus, spleen, pyloric caecum

Sparus aurata

 

2

2

   

Takifugu rubripes (fugu)

 

2

1

   

Thunnus thynnus

 

2

1

   

Zosterisessor ophiocephalus

 

1

1

   

Leucoraja erinacea (little skate)

Sharks & Rays

8

2

  

Liver

Squalus acanthias (spiny dogfish)

 

3

3

   

Branchiostoma floridae (amphioxus)

Lancelets

3

    

Drosophila melanogaster (fruit fly)

Insects

8

    

Drosophila pseudoobscura

 

2

    

Drosophila ananassae

 

1

    

Drosophila erecta

 

1

    

Aedes aegypti

 

3

    

Anopheles gambiae

 

1

    

Lutzomyia longipalpis

 

1

    

Phlebotomus papatasi

 

1

    

Bombyx mori

 

3

    

Apis mellifera

 

1

    

Acyrthosiphon pisum

 

3

    

Aphis gossypii

 

1

    

Heliconius erato/himera mixed

 

1

    

Heliconius melpomene

 

1

    

Tribolium castaneum

 

3

    

Diabrotica virgifera virgifera

 

1

    

Rhipicephalus appendiculatus

Arachnids

1

    

Ixodes scapularis

 

2

    

Daphnia pulex

Crustaceans

1

    

Homarus americanus

 

1

    

Lottia gigantea

Molluscs

4

    

Aplysia californica

 

2

    

Crassostrea gigas

 

2

    

Mytilus californianus

 

2

    

Capitella sp. I ECS-2004

Annelids

3

    

Nematostella vectensis (sea anemone)

Cnidarians

5

    

Hydra vulgaris (hydra)

 

1

    

Total EST Hits

 

1251

857

   
  1. # The order of tissues is based on the copy number of cDNAs encoding corresponding protein. The cDNAs from mixed tissues are ignored in counting.
  2. + The high expresion of Cide proteins in these tissues is verified by expriments, but not observed in the current EST database.
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BMC Ecology and Evolution

ISSN: 2730-7182

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