Data Set | Foreground branch | f | l | Estimated parameters | κ | Positive selection (BEB) |
---|---|---|---|---|---|---|
RPS4Y1 | Hsa Y1 | 14 | -1275.00 | p0 = 1 p1 = 0 (p2+p3 = 0), ω2 = 1 | 3.40 | |
RPS4Y2 | Hsa Y2 | 8 | -1233.73 | p0 = 0 p1 = 0 (p2+p3 = 1), ω2 = 139.62 | 3.78 | 68H*, 70L*, 87I*, 108C*, 185A* |
RPS4X | Hsa X | 10 | -1100.83 | p0 = 1 p1 = 0 (p2+p3 = 0), ω2 = 1 | --- b | |
RPS4 Y1/Y2 | Hsa Y2 | 20 | -1562.15 | p0 = 0 p1 = 0 (p2+p3 = 1), ω2 a | 4.61 | 70I*, 185G* |
Y2cluster | 20 | -1570.33 | p0 = 0 p1 = 1 (p2+p3 = 1), ω2 = 139.62 | 4.59 | ||
RPS4 Y1/Y2/X | Hsa Y2 | 28 | -1971.13 | p0 = 0 p1 = 0 (p2+p3 = 1), ω2 a | 3.21 | 68R*, 70I*, 87M*, 104D*, 108R*, 185G* |
Y2cluster | 28 | -1986.19 | p0 = 0.942 p1 = 0.058 (p2+p3 = 0), ω2 = 1 | 3.12 | ||
Y1Y2X No Hsa Y2 | Y2cluster | 26 | -1925.91 | p0 = 0.939 p1 = 0.061 (p2+p3 = 0), ω2 = 1 | 3.16 | |
Y1Y2 No Hsa Y2 | Y2cluster | 18 | -1516.95 | p0 = 0.901 p1 = 0.099 (p2+p3 = 0), ω2 = 1 | 4.62 | |
Y1Y2X Hsa | Hsa Y2 | 8 | -1619.84 | p0 = 0.647 p1 = 0.021 (p2+p3 = 0.332), ω2 = 1 | 3.03 | 68R, 70I, 87M, 104D, 108R, 180L, 185G, 205F, 222L (P > 0.71) |