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Table 2 Comparison of Relative Divergence Factors calculated using different reference sets of non-gnetophyte seed plants.

From: The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates

Gene

setA

set B

set C

set D

set E

average

All

1.69

1.53

1.67

1.50

1.54

1.59

atpA

1.53

1.36

1.44

1.30

1.32

1.39

atpB

1.57

1.44

1.59

1.37

1.38

1.47

atpE

1.59

1.52

1.63

1.44

1.47

1.53

atpF

1.58

1.32

1.39

1.30

1.33

1.38

atpH

1.40

1.36

1.23

1.42

1.38

1.36

atpI

1.60

1.56

1.64

1.45

1.50

1.55

ccsA

1.68

1.54

1.81

1.49

1.58

1.62

cemA

1.51

1.27

1.51

1.22

1.27

1.36

matK

1.92

1.77

1.91

1.72

1.81

1.83

petA

1.64

1.48

1.68

1.43

1.49

1.54

petB

1.74

1.79

1.83

1.66

1.74

1.75

petD

1.67

1.52

1.65

1.54

1.60

1.60

petG

1.81

1.55

1.95

1.49

1.65

1.69

petN

1.34

1.16

1.16

1.08

1.10

1.17

psaA

1.95

1.35

1.52

1.37

1.38

1.51

psaB

1.53

1.33

1.42

1.36

1.37

1.40

psaC

1.80

1.86

1.96

1.77

1.95

1.87

psaI

2.54

2.03

2.27

2.02

1.95

2.16

psaJ

1.13

0.87

0.93

1.05

0.88

0.97

psbA

1.51

1.32

1.38

1.29

1.34

1.37

psbB

1.62

1.57

1.66

1.49

1.53

1.57

psbC

1.64

1.51

1.50

1.52

1.51

1.54

psbD

1.76

1.68

1.67

1.46

1.66

1.64

psbE

1.55

1.39

1.74

1.25

1.35

1.46

psbF

2.97

2.64

3.45

2.97

2.67

2.94

psbH

1.65

1.61

1.57

1.39

1.44

1.53

psbI

1.37

1.45

1.43

1.23

1.34

1.36

psbJ

2.17

2.05

2.14

1.78

1.86

2.00

psbK

1.54

1.30

1.35

1.25

1.29

1.34

psbL

1.31

0.97

1.08

1.19

1.03

1.12

psbM

1.33

1.07

1.36

1.02

0.99

1.15

psbN

1.78

1.32

1.50

1.29

1.33

1.45

psbT

1.25

1.39

1.75

0.94

1.16

1.30

psbZ

2.04

2.02

2.19

1.91

2.01

2.03

rbcL

1.48

1.42

1.61

1.32

1.36

1.44

rpl14

1.86

1.62

1.62

1.64

1.68

1.68

rpl16

2.14

2.27

2.28

2.02

2.09

2.16

rpl20

1.61

1.53

1.54

1.45

1.53

1.53

rpl33

2.02

2.39

2.32

2.43

2.46

2.32

rpl36

2.26

1.99

2.28

2.10

1.83

2.09

rpoA

2.15

2.27

2.40

1.93

2.03

2.15

rpoB

1.89

1.69

1.82

1.49

1.58

1.69

rpoC1

2.07

1.69

1.77

1.14

1.57

1.65

rpoC2

1.73

1.58

1.70

1.46

1.54

1.60

rps11

2.62

2.59

2.84

2.24

2.40

2.54

rps12

1.98

1.72

1.46

1.49

1.60

1.65

rps14

2.02

2.01

2.35

1.78

1.91

2.01

rps15

1.88

1.72

1.43

1.61

1.70

1.67

rps18

2.99

2.15

2.43

2.40

2.11

2.41

rps19

1.95

2.19

2.07

2.01

2.05

2.05

rps2

2.10

2.02

2.04

1.82

1.85

1.97

rps3

2.18

2.20

2.35

2.02

2.10

2.17

rps4

1.83

1.73

1.76

1.68

1.62

1.72

rps7

2.20

2.37

2.58

1.64

1.69

2.10

rps8

1.57

1.29

1.40

1.23

1.32

1.36

ycf3

1.95

1.53

1.54

1.69

1.63

1.67

ycf4

1.63

1.36

1.49

1.32

1.05

1.37

  1. Relative divergence factor values indicated in bold are significantly different than 1 (two-tailed t-test. p < 0.05). Detailed information on each set of calculations can be found in Additional files 3, 4, 5, 6, 7.
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