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Table 1 Primers used for the RT-PCR and PCR analysis

From: RNA editing and alternative splicing of the insect nAChR subunit alpha6 transcript: evolutionary conservation, divergence and regulation

Species

Experiment

Primer name

Primer sequence(5'-3')

B. mori

5' RACE

BmDa-3-14

caccttaggttgtagtcattcca

 

5' RACE

BmDa-3-13

tgttcggtgttatccttaagtcct

 

Editing, AS

BmDa-5-1

gtgctgacgagggttttgacggga

 

Editing, AS

BmDa-5-4

acgaaaaacgtctgctgaacgccct

 

Editing, AS

BmDa-5-8

tggctaaacttggaatg

 

Editing, AS

BmDa-5-9

tcatagatgtggacgagaag

 

Editing, AS

BmDa-5-10

gctaaacttggacgag

 

Editing, AS

BmDa-5-11

gtagcgcactgcccgtgtcca

 

Editing, AS

BmDa-5-19

cgatgtagctgcttacgattgggt

 

Editing, AS

BmDa-3-1

ctgattgccatcatatgtccagct

 

Editing, AS

BmDa-3-2

ccagctaccaaacttcatatcac

 

Editing, AS

BmDa-3-3

tcactgcacgatgatatgcggc

 

Editing, AS

BmDa-3-5

ccgagtgtcaatttctccccagaat

 

Intron7

BmDa-5-6

aggaatgccgggcaaaaagaaca

  

BmDa-3-18

ttgagtcctattaacaggcgaacaga

 

GAPDH

BmGAP5-1

ctactgttcatgccacaactgct

 

GAPDH

BmGAP3-1

tgtacttgatgagatcaatgact

D. melanogaster

Editing, AS

DmDa-5-1

agttcggactgacgctgcagcagat

 

Editing, AS

DmDa-5-2

cggatgagggattcgatggcacgt

 

Editing, AS

DmDa-3-1

gcaagtaccactcgccatttgttat

 

Editing, AS

DmDa-3-2

gaggcgaccatgaacatgatgcaat

A. mellifera

Editing

AmDa-5-1

gtgcggatgagggtttcgacggga

 

Editing, AS

AmDa-5-2:

gaatgggtggactacaacctccaat

 

Editing, AS

AmDa-5-3

ggacgtcacgagaaacgtttgttg

 

Editing

AmDa-3-1

ctggttgccgtcgtaggtccagga

 

Editing, AS

AmDa-3-3

tgtacatgagaatgtctggcttcca

 

Editing, AS

AmDa-3-5

ctgtccaccaccatagcggcga

T. castaneum

Editing, AS

TcDa-5-1

aggggccgcacgaaaagcggctact

 

Editing, AS

TcDa-5-2

aacgactataatctcaaatggaacg

 

Editing, AS

TcDa-5-3

gtgcggatgagggtttcgacg

 

Editing, AS

TcDa-3-1

cctggttgccgtcataggtccagct

 

Editing, AS

TcDa-3-2

cataagaacatcaggcttccaca

 

Editing, AS

TcDa-3-4

gcctactgcacgattatgtgcgg

 

Editing, AS

TcDa-3-5

ttgaggcatttcgtggatatcagc

 

Editing, AS

TcDa-3-6

caagaccactgacgacgctaccat

  1. AS: Alternative splicing