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Table 1 Pigment synthesis genes in human and teleost fish

From: Evolution of pigment synthesis pathways by gene and genome duplication in fish

gene

human

zebrafish

medaka

stickleback

Takifugu

Tetraodon

other teleosts

tyr #

chr 11

LG 15 (sdy)

LG 13 (i-b/-1/-4/-6)

chr I

scaf 172

scaf 12050

Omy, Oni and other cichlids

  

-

chr 14

chr VII

scaf 176

chr 7

Eha, Gpe, Ipu, Omy, Oni

tyrp1 #

chr 9

LG 7*

LG 18

chr VII

scaf 2235

scaf 14681

Cau, Omy, Oni, Ppr, Ssa

  

LG 1

chr 1

chr IX

-

scaf 13631ψ

Man, Ppr

dct

chr 13

LG 9

chr 21

chr XVI

scaf 103

chr 2

Cau, Ipu, Omy, Ssa

silv #

chr 12

LG 11 (fdv)

chr 5

scaf 27

scaf 47

chr 11

Hsp, Omy, Ppr

  

chr 23

chr 7

chr XII

scaf 304

chr 9

Abu, Omy, Ssa

oca2

chr 15

chr 6

LG 4 (i-3)

chr VIII

scaf 13

chr 1

Ame

aim1

chr 5

LG 21

LG 12 (b)

chr XIV

scaf 44

chr 4

Omy, several cichlids

slc24a5

chr 15

LG 18 (gol)

chr 3

chr II

scaf 1

chr 5

Ppr

gchIa

chr 14

LG 17*

scaf445

chr II

scaf 1

scaf 15099

Hhi, Omy, Ppr

gchIb

-

LG 12*

chr 19

chr V

scaf 952

scaf 7971

Fhe

gchIc

-

-

-

chr VIII

scaf 208

chr 1

Sau

gchfr

chr 15

chr 17

chr 22

chr XV

scaf 23

chr 10

Fhe, Omy, Ssa

pts

chr 11

chr 12

chr 19

chr V

scaf 3

scaf 14338

Omy, Pfl, Ppr, Pre, Ssa

spr #

chr 2

chr 5

chr 10

chr XIV

scaf 106

scaf 21575

Ipu, Omy, Pfl, Pol, Ppr, Ssa

  

chr 8

-

chr XIII

scaf 11

-

-

xdh

chr 2

LG 22

chr 2

chr I

scaf 57

chr 3

Fhe, Sch, Ssa

clot (txnl5)

chr 17

chr 15

chr 13

chr I

scaf 271

chr 16

Cca, Ipu, Omy, Ppr, Ssa

pcbd1

chr 10

chr 13

chr 14

chr VI

scaf 53, scaf 178ψ

chr 17

Fhe, Hhi, Ipu, Omy, Pfl

pcbd2

chr 5

chr 21

chr 15

scaf 324

scaf 71

chr 7

Man, Omy, Ppr, Ssa

dhpr #

chr 4

chr 14

chr 10

chr IV

scaf 70

chr 20

Cca, Omy, Ppr, Psa, Ssa, Hsp

  

chr1

-

-

-

-

Omy, Ppr, Ssa

pam

chr 13

LG 9 (esr)

chr 21

chr XVI

scaf 31

chr 2

Abu, Hhi, Omy, Ppr

  1. Genomic locations are given as linkage groups (LG) if genes have been mapped or as chromosomes (chr) or scaffolds (scaf) as obtained from Ensembl genome assemblies [77]. Three zebrafish genes have been mapped with radiation hybrid panel in the present study (*). Names of mutants from zebrafish and medaka are given in brackets. ψ indicates pseudogenes. # indicates duplications based on the fish-specific genome duplication, lineage-specific duplications are underlined. Scientific names of other teleosts are abbreviated as follows: Abu: Astatotilapia burtoni (haplochromine cichlid); Ame: Astyanax mexicanus (Mexican tetra); Cau: Carassius auratus (goldfish); Cca: Cyprinus carpio (common carp); Eha: Elops hawaiensis (Hawaiian ladyfish); Fhe: Fundulus heteroclitus (killifish); Gpe: Gnathonemus petersii (elephantnose fish); Hsp: Haplochromis spec. (haplochromine cichlid); Hhi: Hippoglossus hippoglossus (Atlantic halibut); Ipu: Ictalurus punctatus (channel catfish); Man: Misgurnus anguillicaudatus (oriental weatherfish); Omy: Oncorhynchus mykiss (rainbow trout); Oni: Oreochromis niloticus (Nile tilapia); Pfl: Platichthys flesus (European flounder); Pol: Paralichthys olivaceus (bastard halibut); Ppr: Pimephales promelas (fathead minnow); Pre: Poecilia reticulata (guppy); Psa: Pomatomus saltatrix (bluefish); Sau: Sparus aurata (gilthead seabream); Sch: Siniperca chuatsi (Chinese perch); Ssa: Salmo salar (Atlantic salmon).