Table 1 Conserved Blocks in rbcS 5'-NCS

01

GCGTCTGATTT

(?)ARR1 site

02

AAGGAGCCAAAAGC

(?)Dof site

03

AACCGATCAAGTGGAGA

(?)MYC site

04

AAAAATGAAAAACTTGTC

(?)GT-1 site

05

AACCATACACA

(?)MYB site

06*

ATCACACATT

rbcS Box III* [32]

07

ATATCCTCTTCCTACCCCCAT

(?)PHR1 site; (?)MYB site

08*

GATGAGATAAGA

rbcS I-box [31]; rbcS-CMA5 [28]

09*

TTTGAGATAAGGA

rbcS I-box [31]; Manzara 5 [27]

10*

ACACGTGGCA

rbcS G-box [31]; rbcS-CMA4/5 [28]

11*

TCCTATTGGTGGCT

rbcS-CMA4 [28]; Manzara 4/8 [27]

12*

GATAAGGCT

rbcS I-box [31]; rbcS-CMA4 [28]

13

TCAACACCTTTCCTT

(?)RAV1-A site; (?)Dof site

14

GGCACTTAGCTCCAATT

(?)CCAAT-box

15

TTTCCAACC

(?)MYB site

16*

AGGGGTTAAA

Manzara 6 [27]; (?)GT1-core [32]

17*

ATCTTGTGTGGTTAAT

rbcS Box II [32]; rbcS-CMA3 [28]; Manzara 8 [27]

18

AACGACGTTATCATGAAT

(?)ACGT element; (-)I-box [27]

19*

GCAAAGTTT

rbcS 3AF-5 site [43]; rbcS-CMA3 [28]

20*

TGTAATGTCA

Manzara 9 [49]; (?)(-)W-box

21*

ATCATTTTCAC

rbcS Box III [32]; rbcS-CMA3 [28]

22*

CCACATAA

rbcS-CMA2 [28]; Manzara 10 [49]

23*

TCCAATGGTTA

rbcS-CMA2 [28]; Manzara 12–13 [49]; CAAT-box

24

ACCCTTTGATCATTA

(?)(-)Dof site

25*

TCTAAGATGAGGTTTGCT

rbcS-CMA2 [28]; Manzara 15 [49]

26

TACCACAATTT

(?)CAAT-box

27

ACCATAATATTGGAA

rbcS-CMA1 [28]; (?)(-)CCAAT-box

28*

TTGTGTCCGTTAGATG

Manzara 16 [49]; (?)MYB site

29*

CCTTATCAT

rbcS-CMA1 [28]; LRE [49]

30*

TATATAAA

rbcS-CMA1 [28]; TATA-box [49]

31

GAGGGGGA

(?)WT-1 site

32

ATGACAAAACCA

(?)W-box; (?)MYB site

33*

AAGCTTTGCAA

rbcS Box V [90]; (?)(-)Dof site

34

GCAATAACCCTCTT

(?)CAAT-box

35

AAGAAGAAGA

-

36

TTTTCAGCA

-