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Table 1 Paralog sequence similarity of fugu protocadherin subclusters

From: Sequencing and comparative analysis of fugu protocadherin clusters reveal diversity of protocadherin genes among teleosts

 

5' low homology region

3' high homology region

Paralog subclustersa

Pcdh protein sequenceb

Amino acid identityc (%)

Nucleotide identityd (%)

Pcdh protein sequenceb

Amino acid identityc (%)

Nucleotide identityd (%)

FrPcdh2α2–7

1–331

80.0 ± 13.4

79.0 ± 13.9

332–777

99.3 ± 0.3

99.3 ± 0.2

FrPcdh2α8–25

1–507

67.6 ± 10.8

69.9 ± 9.9

508–759

99.4 ± 0.3

99.1 ± 0.2

FrPcdh2α26–36

1–487

57.5 ± 6.6

60.7 ± 5.1

488–770

99.4 ± 0.3

99.4 ± 0.3

FrPcdh2γ1–17

1–356

70.0 ± 10.8

72.7 ± 10.0

357–764

99.6 ± 0.3

99.3 ± 0.3

FrPcdh2γ19–32'

1–507

66.4 ± 9.0

68.2 ± 8.5

508–781

99.3 ± 0.3

99.3 ± 0.2

FrPcdh2γ33'-36'

1–449

66.5 ± 9.5

68.7 ± 7.3

450–792

99.3 ± 0.6

99.6 ± 0.3

  1. a The fugu Pcdh sequences used for this analysis do not include the coding sequences for the signal peptide.
  2. b The numbers refer to the consensus of the amino acid sequence alignment without the signal peptide sequence
  3. c The amino acid sequence identity is calculated by average of the pair-wise comparison of paralog members in the same subcluster and expressed as mean ± standard deviation.
  4. d Nucleotide sequences were aligned according to the amino acid alignment and the percentage identity is calculated by average of the pair-wise comparison and expressed as mean ± standard deviation.